Structure of PDB 6rxv Chain CD Binding Site BS02

Receptor Information
>6rxv Chain CD (length=420) Species: 759272 (Thermochaetoides thermophila DSM 1495) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LFILTETSAGYALFKAIKYKEFAKFDSAAIAVEEASGILEGKVTPKLASL
LNELKDEKKVTLAVHDTKLSNSITKLPGINIKPISGSMTDDLFRAIRQHL
YNLIPGMEPSNFDEMNLGLAHSLSRHKLKFSPEKVDVMIVHAVALLDELD
KELNVMAMRVKEWYGWHFPELGKILPDNLSYARVVLALGLRTNAPNADLS
EILPPEIEAAVKAAADISMGTEISTEDYENIKLLAVQVVERSEYRRQLAE
YLQNRMKAISPNMTELIGALVGARLIAHSGSLVNLAKNPGSTIQILGAEK
ALFRALKTKHATPKYGIIYHASLVGQASGPNKGKIARQLAAKIALSVRTD
AFEDFPENADDETRAAVGIQARAKLENNLRLLEGKPLNKGVALGPNGIPV
GMPAKWDVKEARKYNIEADG
Ligand information
>6rxv Chain C2 (length=230) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
agcgacaauacuucagagaaucauuucuauaguaguuguccucucuugug
uuuccuaaaggagccacagaucccacccggguugaugaacgagauccucg
gcgccagugagguccauuuacucucgcucuaccugcaaagguggcggucg
cgugccucgucucgcggcuguauagagaguggcgaugaucuguaccccgc
ggggugggugucgauggaagucugaccggc
..................................................
..........................<<<<......<.......<<<<<<
<<<<.<<............<<<<<<...<<<<<<....>>>>>><<<<<<
<<.<......>.>>>>>>>>....>>>>>>.........>>.<<<<<<..
>>>>>>.>>>>>>>.>>>...>...>>>>.
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6rxv Thermophile 90S Pre-ribosome Structures Reveal the Reverse Order of Co-transcriptional 18S rRNA Subdomain Integration.
Resolution4.0 Å
Binding residue
(original residue number in PDB)		R300 H304 T318 Q320 I321 E325 K326 F329 R330 K333 H336 A337 T338 P339 K340 Y341 Y345 H346 G359 K360 R363 Q364 A367 K368 L371 K400
Binding residue
(residue number reindexed from 1)		R274 H278 T292 Q294 I295 E299 K300 F303 R304 K307 H310 A311 T312 P313 K314 Y315 Y319 H320 G333 K334 R337 Q338 A341 K342 L345 K374
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Cellular Component
GO:0005634 nucleus
GO:0005730 nucleolus
GO:0031428 box C/D methylation guide snoRNP complex
GO:0032040 small-subunit processome

View graph for
Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:6rxv, PDBe:6rxv, PDBj:6rxv
PDBsum6rxv
PubMed31378463
UniProtG0RYF6

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