Structure of PDB 8yvp Chain C Binding Site BS02

Receptor Information
>8yvp Chain C (length=199) Species: 10090 (Mus musculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TTLAFKFLHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAAD
CSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMI
CGWDKRGPGLYYVDSEGNRISGTAFSVGSGSVYAYGVMDRGYSYDLKVEE
AYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLHDKYS
Ligand information
Ligand IDA1L0D
InChIInChI=1S/C20H38BN5O5/c1-14(17(22)13-27)31-21(29,30)19(15-8-4-2-5-9-15)23-20(28)18-12-26(25-24-18)16-10-6-3-7-11-16/h12,14-17,19,27,29H,2-11,13,22,30H2,1H3,(H,23,28)/t14-,17-,19+/m1/s1
InChIKeyFHUGSJNRJRMQPB-BJZITVGISA-N
SMILES
SoftwareSMILES
CACTVS 3.385C[CH](O[B-](O)([OH2+])[CH](NC(=O)c1cn(nn1)C2CCCCC2)C3CCCCC3)[CH](N)CO
CACTVS 3.385C[C@@H](O[B-](O)([OH2+])[C@@H](NC(=O)c1cn(nn1)C2CCCCC2)C3CCCCC3)[C@H](N)CO
OpenEye OEToolkits 2.0.7B(C(C1CCCCC1)NC(=O)c2cn(nn2)C3CCCCC3)([OH2])(O)OC(C)C(CO)N
OpenEye OEToolkits 2.0.7B([C@H](C1CCCCC1)NC(=O)c2cn(nn2)C3CCCCC3)([OH2])(O)O[C@H](C)[C@@H](CO)N
FormulaC20 H38 B N5 O5
Name[(2~{R},3~{R})-3-azanyl-4-oxidanyl-butan-2-yl]oxy-[(~{R})-cyclohexyl-[(1-cyclohexyl-1,2,3-triazol-4-yl)carbonylamino]methyl]-$l^{3}-oxidanyl-oxidanyl-boron
ChEMBL
DrugBank
ZINC
PDB chain8yvp Chain C Residue 302 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8yvp Optimization of alpha-amido boronic acids via cryo-electron microscopy analysis: Discovery of a novel highly selective immunoproteasome subunit LMP7 ( beta 5i)/LMP2 ( beta 1i) dual inhibitor.
Resolution2.5 Å
Binding residue
(original residue number in PDB)
T2 D17 A20 T21 A22 V31 K33 M45 G47 A49 G129 S130 S170
Binding residue
(residue number reindexed from 1)
T1 D16 A19 T20 A21 V30 K32 M44 G46 A48 G128 S129 S169
Annotation score1
External links
PDB RCSB:8yvp, PDBe:8yvp, PDBj:8yvp
PDBsum8yvp
PubMed38906067
UniProtO55234|PSB5_MOUSE Proteasome subunit beta type-5 (Gene Name=Psmb5)

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