Structure of PDB 8rdj Chain C Binding Site BS02

Receptor Information
>8rdj Chain C (length=1040) Species: 3728 (Sinapis alba) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GTSTIPGFNQIQFEGFYRFIDQGLIEELSKFPKIEDIDHEIEFQLFVETY
QLVEPLIKERDAVYESLTYSSELYVSAGLIWKTNRNMQEQRIFIGNIPLM
NSLGTFIVNGIYRVVINQILQSPGIYYQSELDHNGISVYTGTIISDWGGR
LELEIDKKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSF
LTDKEKKKIGSKENAILEFYQQFSCVGGDPIFSESLCKELQKKFFHQRCE
LGRIGRRNINWRLNLNIPQNNIFLLPRDILAAADHLIGMKFGMGTLDDMN
HLKNKRIRSVADLLQDQLGLALARLENVVKGTIGGAIRHKLIPTPQNLVT
STPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTAN
FRIRDIHPSHYGRICPIDTSEGINVGLIGSLSIHARIGDWGSLESPFYEL
VEKSKKAQIRMLFLSPSQDEYYMIAAGNSLALNRGIQEEQVVPARYRQEF
LTIAWEEVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPL
SRSEKCIVGTGLERQVALDSGVPAIAEHEGKILYTDTEKIILSGNENTLS
IPLIMYQRSNKNTCMHQKPQVRRGKCIKKGQILADGAATVGGELALGKNV
LVAYMPWEGYNFEDAVLISECLVYGDIYTSFHIRKYEIQTHVTTQGPERI
TKEIPHLEGRLLRNLDKNGIVMLGSWVETGDILVGKLTPSKETCLKLPIG
GRGRVIDVRWVQKKGGSSYNPEIIRVYISQKREIKVGDKVAGRHGNKGII
SKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDR
HYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDG
RTGDPFEQPVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRSKQ
GGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIP
KPEDAPESFRLLVRELRSLALELNHFLVSEKNFQINRKEV
Ligand information
>8rdj Chain Y (length=40) [Search DNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
tcgcgtctctctaaaattgcagtcccgcgcgccgtaggac
Receptor-Ligand Complex Structure
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PDB8rdj Structure of the plant plastid-encoded RNA polymerase.
Resolution2.62 Å
Binding residue
(original residue number in PDB)		K164 R174 K175 R404 G978 R979 R986 M990
Binding residue
(residue number reindexed from 1)		K157 R167 K168 R397 G946 R947 R954 M958
Enzymatic activity
Enzyme Commision number 2.7.7.6: DNA-directed RNA polymerase.
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003899 DNA-directed 5'-3' RNA polymerase activity
GO:0016779 nucleotidyltransferase activity
GO:0032549 ribonucleoside binding
Biological Process
GO:0006351 DNA-templated transcription
Cellular Component
GO:0000428 DNA-directed RNA polymerase complex
GO:0009507 chloroplast

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8rdj, PDBe:8rdj, PDBj:8rdj
PDBsum8rdj
PubMed38428394
UniProtA0A6C0M5W1

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