Structure of PDB 8ot8 Chain C Binding Site BS02

Receptor Information
>8ot8 Chain C (length=405) Species: 2900548 (Actinomycetota bacterium) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
STNWAGNVVYRASELHRPASLDELRRVVARSPKVRVLGSGHSFNEITDTE
GALVSLEALPPEVEIDRATGTARVAAGLRYGELSARLHAAGYALPNLASL
PHICVAGACATGTHGSGDGIGGLAGSVTAVELVTADGDLVTLSRDADPDR
FPGAVVSLGALGAVVTMTLRLEPAFQVRQRVYENLPAEALDDHFDEIMAS
GYSVSLFTDWRGDRIRQVWVKERVPVVAALPAPRHPVPGMPAANCTEQLG
VPGPWHERLPHFRLGFTPSGDELQAEYLLPRRHAVAAFHALAGIADRIAP
VLHISEIRTVAADDLWLSPFHGRNTVAFHFTWKPDEAAVREVLSLMEEVL
APFEPRPHWGKLFAIPPKVLRSRYDRIGDFRALARELDPSGKFANAFVAH
HVLDD
Ligand information
Ligand IDXUL
InChIInChI=1S/C5H10O5/c6-1-3(8)5(10)4(9)2-7/h3,5-8,10H,1-2H2/t3-,5+/m1/s1
InChIKeyZAQJHHRNXZUBTE-WUJLRWPWSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04O=C(CO)C(O)C(O)CO
OpenEye OEToolkits 1.5.0C(C(C(C(=O)CO)O)O)O
OpenEye OEToolkits 1.5.0C([C@H]([C@@H](C(=O)CO)O)O)O
CACTVS 3.341OC[CH](O)[CH](O)C(=O)CO
CACTVS 3.341OC[C@@H](O)[C@H](O)C(=O)CO
FormulaC5 H10 O5
NameD-XYLULOSE
ChEMBLCHEMBL195094
DrugBank
ZINCZINC000100028356
PDB chain8ot8 Chain C Residue 502 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB8ot8 Discovery and biochemical characterization of thermostable glycerol oxidases.
Resolution2.4 Å
Binding residue
(original residue number in PDB)		S103 F282 Q295 E327 H350 T352 K382
Binding residue
(residue number reindexed from 1)		S99 F262 Q274 E306 H329 T331 K361
Annotation score1
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sat Nov 30 19:16:45 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '8ot8', asym_id = 'C', bs = 'BS02', title = 'Discovery and biochemical characterization of thermostable glycerol oxidases.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='8ot8', asym_id='C', bs='BS02', title='Discovery and biochemical characterization of thermostable glycerol oxidases.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003885,0016020,0016899,0050660,0071949', uniprot = '', pdbid = '8ot8', asym_id = 'C'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003885,0016020,0016899,0050660,0071949', uniprot='', pdbid='8ot8', asym_id='C')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>