Structure of PDB 8ges Chain C Binding Site BS02

Receptor Information
>8ges Chain C (length=642) Species: 301301 (Roseburia hominis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MREVINFNTWAFTKEATEVPKEMPEKWYWVTLPHSWNEIDGQDGGNDYYR
GTCYYAKQLKKSELPEADCYYLELRGANASADVYVNGKAVAHHDGGYSTW
RVDITKELTEEENLIVIAVENGVNDRVYPQNADFTFYGGLYRDVNIIAVN
KSHFDLDYYGGPGIKVTPEIKGADASVEVEVFLTNAAADQKLVYTVKDAE
GKEVAKTETAAGETKAVLSIPAVHLWNGKKDPYLYTAEVALVSGEEAVDA
VSTRFGCRTFEIDPERGFILNGEEYPLRGVSRHQDRWGIGNALLPEHHRE
DIDLICELGATTIRLAHYQHDQYFYDLCDERGLVIWAEIPYISHMPNGRE
NTISQMKELVVQNYNHPSIVVWGLSNEITMAGSSDEDLLENHRILNDMVH
EMDHTRLTTIAVVSMCDIHDPYIQIPDVISYNHYFGWYGGDVSMNGPWMD
NFHKEFPNIPLGMSEYGCEALNWHTSDPKQGDYTEEYQAYYHEEMIKQLF
TRKYIWATHVWNMFDFGADARNEGGENGQNHKGLVTFDRKYKKDSFYAYK
AWLSDEPFVHLCGKRYVDRVEDTTKVTVYSNLPEVELFVNGKSAGKLQAE
DHFFHFEVPNVGESTLVAVAGEYKDESHIRKVDTFNEEYSLK
Ligand information
Ligand IDI9G
InChIInChI=1S/C26H33N7O7S/c34-17-18(35)20(26(37)38)40-25(19(17)36)33-7-5-31(6-8-33)23-21-16(28-30-29-23)15-13-3-1-2-4-14(13)22(27-24(15)41-21)32-9-11-39-12-10-32/h17-20,25,34-36H,1-12H2,(H,37,38)/t17-,18-,19+,20-,25+/m0/s1
InChIKeyAQRGEQSNANJABA-WFFUTXBBSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.6C1CCc2c(c3c4c(c(nnn4)N5CCN(CC5)[C@H]6[C@@H]([C@H]([C@@H]([C@H](O6)C(=O)O)O)O)O)sc3nc2N7CCOCC7)C1
ACDLabs 12.01C7(O)C(O)C(N1CCN(CC1)c2c3c(nnn2)c4c(s3)nc(c5c4CCCC5)N6CCOCC6)OC(C7O)C(=O)O
CACTVS 3.385O[CH]1[CH](O)[CH](O[CH]([CH]1O)C(O)=O)N2CCN(CC2)c3nnnc4c3sc5nc(N6CCOCC6)c7CCCCc7c45
OpenEye OEToolkits 2.0.6C1CCc2c(c3c4c(c(nnn4)N5CCN(CC5)C6C(C(C(C(O6)C(=O)O)O)O)O)sc3nc2N7CCOCC7)C1
CACTVS 3.385O[C@@H]1[C@@H](O)[C@@H](O[C@@H]([C@H]1O)C(O)=O)N2CCN(CC2)c3nnnc4c3sc5nc(N6CCOCC6)c7CCCCc7c45
FormulaC26 H33 N7 O7 S
Name8-(4-beta-D-glucopyranuronosylpiperazin-1-yl)-5-(morpholin-4-yl)-1,2,3,4-tetrahydro[1,2,3]triazino[4',5':4,5]thieno[2,3 -c]isoquinoline;
UNC10201652-glucuronic acid conjugate
ChEMBL
DrugBank
ZINC
PDB chain8ges Chain C Residue 803 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8ges Diverse Human Therapeutics Impact Hormone and Neurotransmitter Homeostasis by Inhibiting Gut Microbial Enzymes
Resolution2.7 Å
Binding residue
(original residue number in PDB)
D133 H318 N378 E379 Y436 Y440 E467 W513 R523 K534
Binding residue
(residue number reindexed from 1)
D133 H317 N376 E377 Y434 Y438 E465 W511 R521 K532
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004565 beta-galactosidase activity
GO:0016798 hydrolase activity, acting on glycosyl bonds
Biological Process
GO:0005975 carbohydrate metabolic process

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Molecular Function

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Biological Process
External links
PDB RCSB:8ges, PDBe:8ges, PDBj:8ges
PDBsum8ges
PubMed38754417
UniProtA0A395V8I7

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