Structure of PDB 8fyb Chain C Binding Site BS02

Receptor Information

>8fyb Chain C (length=309) Species: 906 (Megasphaera)

AGPIIAGKSESSELPRVEDRATFIYIEHAKINRVDSAVTVAEAKGVVRIP
AAMIGVLLLGPGTDISHRAVELLGDTGTALVWVGEQGVRYYASGRALARS
TRFLVKQAELVTNERSRLRVARRMYQMRFPTEDVSKLTMQQLRSHEGARV
RRKYRELSKKYNVPWKKRVYNPDDFAGGDPINQALSAAHVALYGLVHSVV
AALGLSPGLGFVHTGHDRSFIYDVADLYKAEITVPIAFAVAAEAEEGQDI
GQLARLRTRDAFVDGKILKRMVKDLQTLLEIPEEGQIEAEPLSLWDDKEK
LVPYGVNYS

Ligand information

>8fyb Chain H (length=31)

aaacggagacctggtctcaatctgcgtgttc

Receptor-Ligand Complex Structure

Structure summary

• PDB: 8fyb Genome expansion by a CRISPR trimmer-integrase.
• Resolution: 3.1 Å
• Binding residue (original residue number in PDB): I6 K9 R34 R69 E72 L293 Y305 G306 V307 N308 Y309
• Binding residue (residue number reindexed from 1): I5 K8 R33 R68 E71 L292 Y304 G305 V306 N307 Y308

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Sat Nov 16 05:58:13 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1435     title=pdb2title(pdbid)

   1436     if bs.startswith("BS"):

=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

   1438     else:

   1439         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '8fyb', asym_id = 'C', bs = 'BS02', title = 'Genome expansion by a CRISPR trimmer-integrase.'

 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='8fyb', asym_id='C', bs='BS02', title='Genome expansion by a CRISPR trimmer-integrase.')

   1295         display_ec(ec,csaOrig,csaRenu)

   1296     if go:

=> 1297         display_go(go,uniprot,pdbid,asym_id)

   1298     return pubmed,uniprot

   1299 

global display_go = <function display_go>, go = '0003676,0004519,0004520,0043571,0046872,0051607', uniprot = '', pdbid = '8fyb', asym_id = 'C'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003676,0004519,0004520,0043571,0046872,0051607', uniprot='', pdbid='8fyb', asym_id='C')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>