Structure of PDB 7yx0 Chain C Binding Site BS02

Receptor Information
>7yx0 Chain C (length=150) Species: 294 (Pseudomonas fluorescens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MINAKLMQLVINASNDGIVVAEREGKDKPLIYVNPAFERLTGYTLDEILY
QDCRFLQSGDRDQPALMAIRETLESGGACREILRNYRKDGSHFWNELSLS
TVYNEADKQTYFVGVQKDVTLQVKAQQRVGQLEAELNQVKAELAALKATS
Ligand information
Ligand IDJGC
InChIInChI=1S/C17H23N4O9P/c1-7-3-9-10(4-8(7)2)21(15-13(18-9)16(25)20-17(26)19-15)5-11(22)14(24)12(23)6-30-31(27,28)29/h3-4,11-14,18,22-24H,5-6H2,1-2H3,(H,20,25,26)(H2,27,28,29)/t11-,12+,13+,14-/m0/s1
InChIKeyJNFNEOXSUODPSY-DGAVXFQQSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7Cc1cc2c(cc1C)N(C3=NC(=O)NC(=O)C3N2)CC(C(C(COP(=O)(O)O)O)O)O
OpenEye OEToolkits 2.0.7Cc1cc2c(cc1C)N(C3=NC(=O)NC(=O)[C@@H]3N2)C[C@@H]([C@@H]([C@@H](COP(=O)(O)O)O)O)O
CACTVS 3.385Cc1cc2N[CH]3C(=O)NC(=O)N=C3N(C[CH](O)[CH](O)[CH](O)CO[P](O)(O)=O)c2cc1C
CACTVS 3.385Cc1cc2N[C@H]3C(=O)NC(=O)N=C3N(C[C@H](O)[C@H](O)[C@H](O)CO[P](O)(O)=O)c2cc1C
FormulaC17 H23 N4 O9 P
NameFlavin mononucleotide (semi-quinone intermediate);
[(2R,3S,4S)-5-[(4aR)-7,8-dimethyl-2,4-bis(oxidanylidene)-4a,5-dihydrobenzo[g]pteridin-10-yl]-2,3,4-tris(oxidanyl)pentyl] dihydrogen phosphate
ChEMBL
DrugBank
ZINC
PDB chain7yx0 Chain C Residue 202 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7yx0 Crystal structure of the full-length short LOV protein SBW25-LOV from Pseudomonas fluorescens (light state)
Resolution1.6 Å
Binding residue
(original residue number in PDB)
V19 D52 C53 R54 Q57 R61 R70 N85 L97 L99 F112 Q116
Binding residue
(residue number reindexed from 1)
V19 D52 C53 R54 Q57 R61 R70 N85 L97 L99 F112 Q116
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding

View graph for
Molecular Function
External links
PDB RCSB:7yx0, PDBe:7yx0, PDBj:7yx0
PDBsum7yx0
PubMed38280482
UniProtC3K1W0

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