Structure of PDB 7v2d Chain C Binding Site BS02

Receptor Information

>7v2d Chain C (length=156) Species: 9823 (Sus scrofa)

SRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFG
VVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGG
GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIKREKRL
RIWYRR

Ligand information

• Ligand ID: PLX
• InChI: InChI=1S/C42H88NO8P/c1-6-8-10-12-14-16-18-20-21-23-25-27-29-31-33-35-42(45)51-40(39-50-52(46,47)49-37-36-43(3,4)5)38-48-41(44)34-32-30-28-26-24-22-19-17-15-13-11-9-7-2/h40-42,44-45H,6-39H2,1-5H3/p+1/t40-,41+,42+/m1/s1
• InChIKey: YVNJQRQLQPWVSQ-IWSHAHEXSA-O
• SMILES:
  CACTVS 3.341: CCCCCCCCCCCCCCCCC[C@@H](O)O[C@H](CO[C@H](O)CCCCCCCCCCCCCCC)CO[P@@](O)(=O)OCC[N+](C)(C)C
  OpenEye OEToolkits 1.5.0: CCCCCCCCCCCCCCCCCC(O)OC(COC(CCCCCCCCCCCCCCC)O)COP(=O)(O)OCC[N+](C)(C)C
  CACTVS 3.341: CCCCCCCCCCCCCCCCC[CH](O)O[CH](CO[CH](O)CCCCCCCCCCCCCCC)CO[P](O)(=O)OCC[N+](C)(C)C
  ACDLabs 10.04: O=P(OCC(OC(O)CCCCCCCCCCCCCCCCC)COC(O)CCCCCCCCCCCCCCC)(OCC[N+](C)(C)C)O
  OpenEye OEToolkits 1.5.0: CCCCCCCCCCCCCCCCC[C@@H](O)O[C@H](CO[C@@H](CCCCCCCCCCCCCCC)O)CO[P@](=O)(O)OCC[N+](C)(C)C
• Formula: C42 H89 N O8 P
• Name: (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL
• ZINC: ZINC000058638459
• PDB chain: 7v2d Chain C Residue 302

Receptor-Ligand Complex Structure

Structure summary

• PDB: 7v2d The coupling mechanism of mammalian mitochondrial complex I.
• Resolution: 3.3 Å
• Binding residue (original residue number in PDB): L50 W56 R59
• Binding residue (residue number reindexed from 1): L10 W16 R19
• Annotation score: 1

Gene Ontology

Molecular Function

• GO:0008137 NADH dehydrogenase (ubiquinone) activity
• GO:0048038 quinone binding
• GO:0051536 iron-sulfur cluster binding
• GO:0051539 4 iron, 4 sulfur cluster binding

External links

• PDB: RCSB:7v2d, PDBe:7v2d, PDBj:7v2d
• PDBsum: 7v2d
• PubMed: 35145322
• UniProt: A0A8D1TL60