Structure of PDB 7o0v Chain C Binding Site BS02

Receptor Information

>7o0v Chain C (length=299) Species: 1379270 (Gemmatimonas phototrophica)

AATDTVQVGYRGTAMEQNYDHGDLKTKFAQVKLPQSPPPAGESPPGPLPW
KNVQVLNDISIAEFNRTMIAMSTWVAGTGNCAYCHNVAAFQDDTLPNGKP
LYTKIVARRMLQMTRNINGNYSQHVKNTGVTCYTCHMGKPLPNGLWFYSS
QTDYLRHYLDRDGARVITQGVAPSNANRSSTKQAEWTYALMISQSRSLGV
NCTYCHNTRQFASWREAPPARVTAYHGILMLRDVNQNYLAPLQPVYPAVR
LGAMGDAPKAQCVTCHNGAYKPLYGAQMAKDFPAMWGRADWNGVPFPGI

Ligand information

• Ligand ID: RAM
• InChI: InChI=1S/C6H12O5/c1-2-3(7)4(8)5(9)6(10)11-2/h2-10H,1H3/t2-,3-,4+,5+,6+/m0/s1
• InChIKey: SHZGCJCMOBCMKK-HGVZOGFYSA-N
• SMILES:
  CACTVS 3.341: C[C@@H]1O[C@@H](O)[C@H](O)[C@H](O)[C@H]1O
  ACDLabs 10.04: OC1C(O)C(OC(O)C1O)C
  OpenEye OEToolkits 1.5.0: C[C@H]1[C@@H]([C@H]([C@H]([C@@H](O1)O)O)O)O
  OpenEye OEToolkits 1.5.0: CC1C(C(C(C(O1)O)O)O)O
  CACTVS 3.341: C[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
• Formula: C6 H12 O5
• Name: alpha-L-rhamnopyranose;
  alpha-L-rhamnose;
  6-deoxy-alpha-L-mannopyranose;
  L-rhamnose;
  rhamnose
• ZINC: ZINC000003861280
• PDB chain: 7o0v Chain MG Residue 2

Receptor-Ligand Complex Structure

Structure summary

• PDB: 7o0v 2.4- angstrom structure of the double-ring Gemmatimonas phototrophica photosystem.
• Resolution: 2.5 Å
• Binding residue (original residue number in PDB): D174 R175
• Binding residue (residue number reindexed from 1): D160 R161
• Annotation score: 4

Gene Ontology

Molecular Function

• GO:0005506 iron ion binding
• GO:0009055 electron transfer activity
• GO:0020037 heme binding
• GO:0046872 metal ion binding

Biological Process

• GO:0015979 photosynthesis
• GO:0019684 photosynthesis, light reaction

Cellular Component

• GO:0030077 plasma membrane light-harvesting complex

External links

• PDB: RCSB:7o0v, PDBe:7o0v, PDBj:7o0v
• PDBsum: 7o0v
• PubMed: 35171663
• UniProt: A0A143BHR6