Structure of PDB 7d1a Chain C Binding Site BS02

Receptor Information
>7d1a Chain C (length=447) Species: 1359 (Lactococcus cremoris) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TMAILERISKNSQENIDEVFTRLYRYLLRPDIYYVAYQNLYSNKGASTKG
ILDDTADGFSEEKIKKIIQSLKDGTYYPQPVRRMYIAKKNSKKMRPLGIP
TFTDKLIQEAVRIILESIYEPVFEDVSHGFRPQRSCHTALKTIKREFGGA
RWFVEGDIKGCFDNIDHVTLIGLINLKIKDMKMSQLIYKFLKAGYLENWQ
YHKTYSGTPQGGILSPLLANIYLHELDKFVLQLKMKFDRESPERITPEKY
VRYADDFIISVKGSKEDCQWIKEQLKLFIHNKLKMELSEEKTLITHSSQP
ARFLGYDIRVVKKRTLNGSVELLIPLQDKIRQFIFDKKIAIQKKDSSWFP
VHRKYLIRSTDLEIITIYNSELRGICNYYGLASNFNQLNYFAYLMEYSCL
KTIASKHKGTLSKTISMFKDGSGSWGISQAPVLYGYARNTLENRLKA
Ligand information
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB7d1a Exon and protein positioning in a pre-catalytic group II intron RNP primed for splicing.
Resolution3.8 Å
Binding residue
(original residue number in PDB)		R378 L380 F449 Y457 Y461 T474 L475 T478 R531
Binding residue
(residue number reindexed from 1)		R314 L316 F385 Y393 Y397 T410 L411 T414 R438
Enzymatic activity
Enzyme Commision number 2.7.7.49: RNA-directed DNA polymerase.
3.1.-.-
Gene Ontology
Molecular Function
GO:0003964 RNA-directed DNA polymerase activity
GO:0004519 endonuclease activity
Biological Process
GO:0006278 RNA-templated DNA biosynthetic process
GO:0006314 intron homing
GO:0006397 mRNA processing
GO:0006974 DNA damage response

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:7d1a, PDBe:7d1a, PDBj:7d1a
PDBsum7d1a
PubMed33021674
UniProtP0A3U0|LTRA_LACLC Group II intron-encoded protein LtrA (Gene Name=ltrA)

[Back to BioLiP]