Structure of PDB 6zyw Chain C Binding Site BS02

Receptor Information
>6zyw Chain C (length=4433) Species: 312017 (Tetrahymena thermophila SB210) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SKRIAWMKTTICDSLQLKDMIVEESFQYEKNKNLLEQFLSGEGLNKIFAY
YQVQEQAQNDDIKDTGAQDPVLFFTTGDLEKIQDKAVWFLRITNPADDKK
KASQQDGNDNDIIFGEITPNTVPMLNALMESVYSRQIDHIITEKIQFWGV
AEEEQVLEFQQHSNKFSSEVREAINLMSPGTEHFKLDYEAISGLSESEKM
QHYEMKFNEWINLISSQLNRKDEKDAGPATELIYWRSRMQKITNWSEQLK
SKDFQIVKASLQRHKNHDNQRPRGDESLNEAKDNVKYLTTLEKFIEPLYN
GTPQQIIDTLPALMNAIKMIHTIARFYNTTDKMTGLFIKITNQMIKNCKD
RILNMIWEQDPAELIEVLGSCIKLYCEYKKCYNDTKEKVADMPKGKTFDF
SDAQIFGKFDTFVRRLQKLIEIFSNIQQFNALAKHNLEGMDVLTNKFKKI
IDDFKKKGHNLLDTANNKFDRDWVEFNVEISHLDGELQNFIDNNFNRFRN
IEYSLKLLHKFQSTIKRDSLKHNLTSRYNAILHNYATELDTIQRVFQDQK
SNPPLVRNMPPEAGKIIWARHLFQKITGPINIFPENVINSTEIRRYYGSY
NTLGKQLTIYEMWFYQDWVNKIEQSKAALQATLIVRHDENKKLYVNFDLE
IMQLIREAKCLDRQGIEIPESARIILLQEDKFKTYYNELLYALKEYERIN
SKIKPICKNLLLPHIEDLDLKLRPGMVTLTWTSMNIESYLYYVHQGLKKL
EQLIINVNDIIENRIENNLKTVSKVVLVHLPNVEVERAVDDLLQTIMLYP
LDPHVDPVLPEETKRIKRYYFWYFYQALLNSTQNSLNAMKYRVCGKKIPG
ANTLQNLKPFFQVEVQLNGDKVTLNPSLQEIQKSINRAATAVLRCSKHLY
NWDQQNKDSTDKATFYDMIACDKEIVKVILLLTGSIQGTKNKVNEFLSGF
TKFEWLCKESIQESIKKFSKNGPTLQNYEDQLKKFSQIEEEIEKIVPTYK
IGAMELMTHNICTSLSTWAKEWKLQYSQDLHKRARQLLDSLTEQTKMLST
KLSKPVKDIDSLGYVMETLEQIRKEQAEIDMKFNPVQEMYSLLDNYLPGG
ITDKDEMDARSLLRRNWDILIQQAEIKGKEYQHKQAIYLKELKQSIKDFT
NQVSIFRRDYEKNGPMVEGISPAEAMERLRRFEDEYDVKYQMYKINARGE
NLFGLQNQKYPELEKTDAEIKNLNKLYNLYDSVIKNIQQFKEKSWQDVSK
DDLAKMEEDAGKYGEQCSRLPKDLKEWQAYRDLKNYIDSLREQLPLIISL
KKPSIMPRHWEKIKEITNTKLNYENPDQFYIEEIMGAKLLDFREDIEDIT
ESADKQLKIRTGLDEINLYWNDMQFQFGIWGKRDVPCMLNGLIVGTILER
LEEDQLQLSTFNSQRHVTPFKAEVENLIRTFSDVNDTLDMWVKVQKLWTS
LEPVFTGGDIARQMPLQAKQFQGIDKNWMKIMEKAVETKKVIPCCQNDML
KDFLPDLNRKLEDCQKMLEAYLEGKRKKFPRFYFVSNPTLLKILSQGSEP
TSIQEDFEKLFDAITKVTFESAKDKKNPALKQITQIQQVIGRNEENISLT
GYYVKCEGNIEDWLKKLEQNMQQTLKDIASAAAQQVFQVGLKEFVSSQAS
QIALLGLQILWTSKVNEGLERLSRNERNAMDIKRNEIKEHMNILSSMCLE
DLNGAVERTKVETLVTIQVHQKDISMDLKCKDVNDFEWQKQTRIAWKTDI
DECIISITDWDSPYSYEFLGAKERLCITPLTDRCYITLAQAMSMYYGGAP
AGPAGTGKTETVKDLGRTLGVFVVVTNCSDQHRYRDMAKIFKGLVQSGLW
GCFDEFNRIDLEVLSVVAMQVESITTARKQHMKKFMFPEEEIEIELIPTV
SYFITMNPGYAGRQELPENLKVLFRGVSMMVPDREIIIKVKLASVGYLQI
DLLAKKFNVLYRLCEEQLSKQRHYDFGLRNILSVLRTAGNTKRQEIKSDE
EMLLMRSLRDMNLSKLVADDIPLFNGLLADIFPKLKEVPKKLYPDVEKKI
PEEINAESYLINTPSFQLKIIQLYETCLVRHGFMLVGPTGSGKSTIMKIL
TEVLTKLGSPHKIVIMNPKAITAEQMYGVKSEISDDWIPGVFSTIWAKSN
NRALKHTTWITCDGPVDAIWIENLNTVLDDNKILTLANGERIAMTENCKV
VFEVENLNNASPATVSRCGQVYVSPTDLGYEAVIEGWIRNRKASGRAEES
DKLGNILRKYLINMRFIELQSKECKEPMMDTSPVISVINILNLLTGCLQY
FVQTQRTLSEQEYEKFIVYSMAWAIGGIYEAQDRVRFHELLLAKNAPIPQ
KGKENETVFDYYVSQDYLDWKICSPEEWVPPQSLQFSQLLLPTLDSFRAE
MLLNFILTQPKSHTCSNSALLIGGSGTAKTSSVLLYCNKFDPQKMLFKRT
NFSSATSPFMFQSTIEAECDFKVGKEFAPPGNKMMTIFIDDMSMPFVNKW
GDQITLELVRQLIETGGFYMLDKTQRGNQRKMKNLQYIGAMNHPGGGRND
IPNRLKRQFFIFNMILPLSIEGIYGPIIKHMFKQKYFSDSTYKVIESLTS
ATIALWNKVKSTMLPTPAKFHYVFNMRELSRIFKGILTCKKDTINDAPKS
MKIKPELFLVGLWRHEAERVLADKLVNNKDKDTVMGYIQEVSLESFSQIE
NEILEKYSSEKTFLFCDFLRPDVINEDGIIEEEAPKIYEAIDSLTELRKR
CNFLLSFYNDRNPSKKMPLVLFDDALKHLLRISRIIRQPRSSGLLVGVGG
SGKQSLTRLAGFIGKNLIQQIIVTKTYSDKDLKEDIKKGFDDAGHLGKQV
TFLMTDSEVKKEEFLEYINMVLSTGEIPNLLAKDEREVWLGDISQAYCKE
KNLGNIDPPQSELWTYFVDRVRDNFHIMLCFSPVGQKFRERARKFPALFN
ECTIDWFLPWPEEALVSVAETFIKNFDKLDTKEETKQELMKHMGNVHLMV
NEICDEYYQKMRRQVYVTPKSFLSYLNSYKTLYIEKYDELDQQEESFKIG
LNKIQEATITINQMEISLKEEEIQLNEATEKTNQLLANLDKESKKANQKG
EEVAATNKQCEIQAEQISKEKEEAERELEAALPALRRAQEAVDSIESKDI
VELKANKKPLDIIKYIMDAVLVFFKARLSYDESGIQTLGDMNFMKKLKEF
EKDSINEETIELLEPYLNQSEFNDTFATKASKAAAGILKWAFAIYEYHQK
SKIVKPKRIQVAIAEGRQAIALKELEKAREDLAQIQAYIKNLKDVYTKQM
EEKNELEMKAAKTKKKINTARTLITSLSGEKDRWGKGAQDISDQKRKLVG
NVSLSTAFISYCGPFNAEYRNKLAQQRFVVDMKKRGVPVTPGLELTSFLI
DDATIGEWNLQGLPKDDLSIQNGIMVTNSARYPLFIDPQGQGQNWIRNKL
SAITTLSHPKFKDMFLKYCMESGLTLIVENIENEVDPMMDPVLELSKEFK
LFMTCRLANPSFSPELSAKTTIIDFTVTQSGLEQQLLGKVISKEQKALED
SLNQLLADVNQNQKDLQRLDKNLLERLINSQGNLLDDTELMDVLNNTKTQ
AKEVAAKLIDAEIKTKEINEKREQYRPVAIRGSAIYFTMIEVSLVNWMYN
SSLEQFLKLFIESIDLSEKAQLPSNRVKNIISFLTFHVYRYVNRGLFEKD
KITFILMMAFKILTTAGTISSGDVSLFLKSQKQISYLEDNQWLNILALSK
PFFKELPDLISRSENQWRNWIDKNDPENFPIPDFAESINQEKEIGSFISL
CLVRSLRNDRTLIATQNFISNVLGKEFTDPISYPIEGIWQESSNMDPVLF
LLSAGADPTSSIDELAKKKKKFPCEKVSMGEGQERVARQVIMKGFVEGGW
VILQNCHLGLKFMEEIETLVSPINQIHEDFRLWITCEQHPKFPLGLLQKT
LKVTNEPPKGLKAGLYKTFTTIITQEFIDKVDHSNWRSLIFTICFLHSIV
IERKKFGPLGWCVPYEYNYSDLEASLLYIEKYLTNLMSTPQPNSHNLPIS
MNVVRYMICEVQYGGRITDDLDRELFITYGETYLKDGIFGNDYFFPQNPS
AELIKYQEYIAKVPTVDNPEVFGLHSNADLTFRLKESKEMINTVMETRPR
EEIVQDKAKDMLKNLPPDYNDVEVRELVSKLGGPNPKTSTERGMTVPLNI
FLYQEVTRMQRVIGLVRKTLQDTILAIDGQIIMTPEILEAINAIYDAKVP
NSWLYDPSGAEISWLLPNLGSWSTSLSDRNKQLNDWLRSGQRPILFWLTG
FFNPQGFLTGMKQEVTRNHKKEAWSLDDVVYSTTVKEREKEPAEGVYIKG
LYLEGCKWSKNGLDDSDPKKIFADLPILHVSAINKSNTYLCPVYKYPKRT
DKYLIFRVGLPCEGSNNPSHWKLRGVALLCSTE
Ligand information
Ligand IDATP
InChIInChI=1S/C10H16N5O13P3/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(26-10)1-25-30(21,22)28-31(23,24)27-29(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H,23,24)(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1
InChIKeyZKHQWZAMYRWXGA-KQYNXXCUSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O)N
CACTVS 3.341Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O
ACDLabs 10.04O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O
OpenEye OEToolkits 1.5.0c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(O)O[P@](=O)(O)OP(=O)(O)O)O)O)N
CACTVS 3.341Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P@](O)(=O)O[P@@](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O
FormulaC10 H16 N5 O13 P3
NameADENOSINE-5'-TRIPHOSPHATE
ChEMBLCHEMBL14249
DrugBankDB00171
ZINCZINC000004261765
PDB chain6zyw Chain C Residue 4702 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6zyw Shulin packages axonemal outer dynein arms for ciliary targeting.
Resolution8.78 Å
Binding residue
(original residue number in PDB)		L2130 I2131 G2162 K2163 S2164
Binding residue
(residue number reindexed from 1)		L2060 I2061 G2092 K2093 S2094
Annotation score5
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005524 ATP binding
GO:0008569 minus-end-directed microtubule motor activity
GO:0016887 ATP hydrolysis activity
GO:0045505 dynein intermediate chain binding
GO:0051959 dynein light intermediate chain binding
Biological Process
GO:0007018 microtubule-based movement
Cellular Component
GO:0005737 cytoplasm
GO:0005856 cytoskeleton
GO:0005858 axonemal dynein complex
GO:0005874 microtubule
GO:0005929 cilium
GO:0030286 dynein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6zyw, PDBe:6zyw, PDBj:6zyw
PDBsum6zyw
PubMed33632841
UniProtQ22A67

[Back to BioLiP]