Structure of PDB 6vzq Chain C Binding Site BS02

Receptor Information
>6vzq Chain C (length=403) Species: 10090 (Mus musculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KKRLVINLSNCRYDSVRRAAQQYGLREAGDNDDWTLYWTDYSVSLERVME
MKSYQKINHFPGMSEICRKDLLARNMSRMLKLFPKDFHFFPRTWCLPADW
GDLQTYSRTRKNKTYICKPDSGARGRGIFITRSVKEIKPGEDMICQLYIS
KPFIIDGFKFDLRVYVLVTSCDPLRVFVYNEGLARFATTSYSHPNLDNLD
EICMHLTNYSINKHSSNFVQDAFSGSKRKLSTFNSYMKTHGYDVEQIWRG
IEDVIIKTLISAHPVIKHNYHTCFPHTLNSACFEILGFDILLDRKLKPWL
LEVNISPSFSTDSKLDKEVKDSLLYDALVLINLGNCDKKKVLEEERQRGR
FLQQCPNREIRLEEVKGFQAMRLQKTEEYEKKNCGGFRLIYPGLNLEKYD
KFF
Ligand information
Ligand IDRZP
InChIInChI=1S/C12H21NO12P2/c1-7(14)13-9(3-5-11(17)18)26(21,25-27(22,23)24)6-8(12(19)20)2-4-10(15)16/h8-9H,2-6H2,1H3,(H,13,14)(H,15,16)(H,17,18)(H,19,20)(H2,22,23,24)/t8-,9-,26-/m1/s1
InChIKeyUGEFVXZLVYNKBK-IFMBPYNJSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7CC(=O)NC(CCC(=O)O)P(=O)(CC(CCC(=O)O)C(=O)O)OP(=O)(O)O
CACTVS 3.385CC(=O)N[C@@H](CCC(O)=O)[P@@](=O)(C[C@@H](CCC(O)=O)C(O)=O)O[P](O)(O)=O
CACTVS 3.385CC(=O)N[CH](CCC(O)=O)[P](=O)(C[CH](CCC(O)=O)C(O)=O)O[P](O)(O)=O
OpenEye OEToolkits 2.0.7CC(=O)N[C@@H](CCC(=O)O)[P@@](=O)(C[C@@H](CCC(=O)O)C(=O)O)OP(=O)(O)O
FormulaC12 H21 N O12 P2
Name(2~{S})-2-[[[(1~{R})-1-acetamido-4-oxidanyl-4-oxidanylidene-butyl]-phosphonooxy-phosphoryl]methyl]pentanedioic acid
ChEMBL
DrugBank
ZINC
PDB chain6vzq Chain C Residue 602 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6vzq Structural basis for polyglutamate chain initiation and elongation by TTLL family enzymes.
Resolution3.08 Å
Binding residue
(original residue number in PDB)		A179 R180 R219 R241 N264 Y265 S266 K283 N361 I362 S363 P364 S365 K377
Binding residue
(residue number reindexed from 1)		A123 R124 R163 R185 N208 Y209 S210 K227 N304 I305 S306 P307 S308 K320
Annotation score1
Enzymatic activity
Enzyme Commision number 6.3.2.-
Gene Ontology
Biological Process
GO:0036211 protein modification process

View graph for
Biological Process
External links
PDB RCSB:6vzq, PDBe:6vzq, PDBj:6vzq
PDBsum6vzq
PubMed32747782
UniProtA4Q9E8|TTLL6_MOUSE Tubulin polyglutamylase TTLL6 (Gene Name=Ttll6)

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