Structure of PDB 6vok Chain C Binding Site BS02

Receptor Information
>6vok Chain C (length=501) Species: 3562 (Spinacia oleracea) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TIRADEISKIIRERIEGYNREVKVVNTGTVLQVGDGIARIHGLDEVMAGE
LVEFEEGTIGIALNLESNNVGVVLMGDGLMIQEGSSVKATGRIAQIPVSE
AYLGRVINALAKPIDGRGEITASESRLIESPAPGIMSRRSVYEPLQTGLI
AIDAMIPVGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIGQK
ASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAPYTGAALAEYFMY
RERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERA
AKLSSLLGEGSMTALPIVETQAGDVSAYIPTNVISITDGQIFLSADLFNA
GIRPAINVGISVSRVGSAAQIKAMKKVAGKLKLELAQFAELEAFAQFASD
LDKATQNQLARGQRLRELLKQPQSAPLTVEEQVMTIYTGTNGYLDSLELD
QVRKYLVELRTYVKTNKPEFQEIISSTKTFTEEAEALLKEAIQEQMERFL
L
Ligand information
Ligand IDTTX
InChIInChI=1S/C22H30N4O4/c1-14(2)11-17-22(30)26(5)18(12-16-9-7-6-8-10-16)21(29)23-13-19(27)25(4)15(3)20(28)24-17/h6-10,12,14-15,17H,11,13H2,1-5H3,(H,23,29)(H,24,28)/b18-12-/t15-,17-/m0/s1
InChIKeySIIRBDOFKDACOK-LFXZBHHUSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04O=C1NC(C(=O)N(/C(C(=O)NCC(=O)N(C)C1C)=C\c2ccccc2)C)CC(C)C
CACTVS 3.341CC(C)C[C@@H]1NC(=O)[C@H](C)N(C)C(=O)CNC(=O)C(=C/c2ccccc2)/N(C)C1=O
OpenEye OEToolkits 1.5.0C[C@H]1C(=O)N[C@H](C(=O)N(/C(=C\c2ccccc2)/C(=O)NCC(=O)N1C)C)CC(C)C
OpenEye OEToolkits 1.5.0CC1C(=O)NC(C(=O)N(C(=Cc2ccccc2)C(=O)NCC(=O)N1C)C)CC(C)C
CACTVS 3.341CC(C)C[CH]1NC(=O)[CH](C)N(C)C(=O)CNC(=O)C(=Cc2ccccc2)N(C)C1=O
FormulaC22 H30 N4 O4
NameTENTOXIN
ChEMBL
DrugBank
ZINCZINC000100230999
PDB chain6vok Chain C Residue 602 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6vok Structural basis of redox modulation on chloroplast ATP synthase.
Resolution3.85 Å
Binding residue
(original residue number in PDB)		L65 E131 Y237 R297
Binding residue
(residue number reindexed from 1)		L63 E129 Y235 R295
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) K176 Q201 K202 R366
Catalytic site (residue number reindexed from 1) K174 Q199 K200 R364
Enzyme Commision number 7.1.2.2: H(+)-transporting two-sector ATPase.
Gene Ontology
Molecular Function
GO:0005524 ATP binding
GO:0032559 adenyl ribonucleotide binding
GO:0043531 ADP binding
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism
GO:0046961 proton-transporting ATPase activity, rotational mechanism
Biological Process
GO:0006754 ATP biosynthetic process
GO:0015986 proton motive force-driven ATP synthesis
GO:0046034 ATP metabolic process
GO:1902600 proton transmembrane transport
Cellular Component
GO:0009507 chloroplast
GO:0009535 chloroplast thylakoid membrane
GO:0009579 thylakoid
GO:0016020 membrane
GO:0043231 intracellular membrane-bounded organelle
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1)

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6vok, PDBe:6vok, PDBj:6vok
PDBsum6vok
PubMed32879423
UniProtP06450|ATPA_SPIOL ATP synthase subunit alpha, chloroplastic (Gene Name=atpA)

[Back to BioLiP]