Structure of PDB 5xqg Chain C Binding Site BS02

Receptor Information
>5xqg Chain C (length=885) Species: 5076 (Penicillium chrysogenum) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
FNCTSSSATVHWLGDKPTYHAGVTFGLPWPQGKYRPQETSFSLTSELQSW
ATGYWADGSLKWTAHAIAESNQIYDQYTVTASSLGCVSSIVVTDNSDALT
VNTGEVAVSFPKGGNVIIGDIKTKSGKVIGANGRLVLQSQDSVPDNFDNR
ANSPIQYSNFDGNINEVFVNQTSARTLVTVRGNHTVTDGTDHDPWLPFVV
RFYLYANSATIKVMHSIVFDGDENDFITGLGIRFDVPLKGEEYYDRHIRF
AGVDGGIFNEAVQGITGLRRDPGEEIRAAQFAGQKLADTETWEPRVSTRL
KWIPTWADYGLTQLTADGFGLKKRTKAGQSWVNIPSGTRAEGLAYLGGAT
QGGLAVGLRDFWKRYPVGLDISNAASDTGELTLWLYSPAAEPLDLRPFHD
GLGQDGYEDQLDALEITYEDWEPGFDTPYGIARTSEVYLFAFDQTPTSDK
LASLTAYMNDPPVLVAEPKYIHETQALGEYWALPGSSPAAATLEDRLQFI
FDFYKGQIEQRRWYGFLDYGDFMHTYDPDRHTWRYDVGGYAWDNSELSPD
LFFWLYFLRTGSKDAYRFAEALTRHTGEVDVYHIGDWKGLGTRHGVQHWS
DSAKQARISQPQYRKYFFYLSGGDERVGELLEELLDTDKTYGELDPQRKV
RTDGWEPSPNSTVSFGLGTDWSGLAAGWLIEWERRGPRWEEAKTKLTNTI
AGIANLTNGFVTGSGLYDPVTWTLGPPPSDPGNRGNVSISHLNAVFGLPE
VVSEAIAYLADDIPKGFKQAWLDYCYYYHASASEQKDRYGVSFKISLLQA
HSRLAAYAAYETKNKTLALRAWKDFYASDGLLPDAPWNITHVDGSDVLVP
VDEAAWLATNDIAQYGLAVIQNLAYVSDSLDDYQS
Ligand information
Ligand IDGAD
InChIInChI=1S/C6H8O5/c7-3-1-5(6(9)10)11-2-4(3)8/h1,3-4,7-8H,2H2,(H,9,10)/t3-,4-/m0/s1
InChIKeyGQECVRZDTXJRPX-IMJSIDKUSA-N
SMILES
SoftwareSMILES
CACTVS 3.341O[CH]1COC(=C[CH]1O)C(O)=O
OpenEye OEToolkits 1.5.0C1[C@@H]([C@H](C=C(O1)C(=O)O)O)O
CACTVS 3.341O[C@H]1COC(=C[C@@H]1O)C(O)=O
ACDLabs 10.04O=C(O)C=1OCC(O)C(O)C=1
OpenEye OEToolkits 1.5.0C1C(C(C=C(O1)C(=O)O)O)O
FormulaC6 H8 O5
Name2,6-anhydro-3-deoxy-L-threo-hex-2-enonic acid
ChEMBL
DrugBankDB03284
ZINC
PDB chain5xqg Chain K Residue 2 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5xqg Crystal structure of exo-rhamnogalacturonan lyase from Penicillium chrysogenum as a member of polysaccharide lyase family 26
Resolution2.74 Å
Binding residue
(original residue number in PDB)		Y458 E587 R634 H635
Binding residue
(residue number reindexed from 1)		Y418 E546 R593 H594
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:5xqg, PDBe:5xqg, PDBj:5xqg
PDBsum5xqg
PubMed29574769
UniProtB6H7Q7

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