Structure of PDB 5xm3 Chain C Binding Site BS02

Receptor Information
>5xm3 Chain C (length=596) Species: 1026882 (Methylophaga aminisulfidivorans MP) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
NDKLVELSKSNENWVMQGKDFSGTHYSTAKQINKDNVKKLRPSWSFSTGV
LNGHEGAPLVVNGTMYIHTPFPNNTFAIDLDEPGVIKWEHKPKQDPAARA
VACCDVVNRGLAYWPGDDKAPAMIVKSLLDGHVVALNAETGEEYWKVENG
DISVGQTETAAPFVAKDLVIQGSSGAELGVRGYVTAYDIHTGEMVWRWYA
TGPDADVGLDKDFNKHNPHYGQKGLGTSTWEDNAWKIGGGTNWGWYAYDP
QLDMFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLETGLAKFGYQKTPHD
EWDYAGVNVMMLSEQKDKNGKMRKLLTHPDRNGIIYTLDRETGDLVSANK
MDDTANWVKKVDLETGLPIRDPEYGTRMGHRSRDVCPSAMGFHNQGFDSY
DPKRELFYLGINHLCMDWEPFMLPYRAGQFFVGANVWTYPGPKGDRQNGI
GSGQVKAYNAITGEFAWEKMEKFSVWGGTTATEGGLVFYGTLDGFIKARD
ADTGKLLWKFKLPSGVIGHPMTYTHKGTQYVAINYGVGGWPAVGLVFDLN
DPSAGLGAVGAFKELAKNTQMGGGVMVFSLDGKSPYDDVSLGEYGM
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain5xm3 Chain C Residue 702 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB5xm3 The crystal structure of methanol dehydrogenase, a quinoprotein from the marine methylotrophic bacterium Methylophaga aminisulfidivorans MPT
Resolution1.701 Å
Binding residue
(original residue number in PDB)		E208 N292
Binding residue
(residue number reindexed from 1)		E177 N261
Annotation score4
Enzymatic activity
Catalytic site (original residue number in PDB) E208 N292 D334
Catalytic site (residue number reindexed from 1) E177 N261 D303
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005509 calcium ion binding
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors
Cellular Component
GO:0016020 membrane
GO:0030288 outer membrane-bounded periplasmic space

View graph for
Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:5xm3, PDBe:5xm3, PDBj:5xm3
PDBsum5xm3
PubMed29492864
UniProtA3FJ48

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