Structure of PDB 5vmd Chain C Binding Site BS02

Receptor Information
>5vmd Chain C (length=73) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GPLGSGQCLYKISSYTSYPMHDFYRCHTCNTDRNAICVNCIKKCHQGHDV
EFIRHDRFFCDCGAGTLSNPCTL
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain5vmd Chain A Residue 1003 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5vmd Crystal structure of the UBR-box from UBR6/FBXO11 reveals domain swapping mediated by zinc binding.
Resolution2.202 Å
Binding residue
(original residue number in PDB)		C890 C899
Binding residue
(residue number reindexed from 1)		C62 C71
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0008270 zinc ion binding

View graph for
Molecular Function
External links
PDB RCSB:5vmd, PDBe:5vmd, PDBj:5vmd
PDBsum5vmd
PubMed28691247
UniProtQ86XK2|FBX11_HUMAN F-box only protein 11 (Gene Name=FBXO11)

[Back to BioLiP]