Structure of PDB 5njb Chain C Binding Site BS02

Receptor Information
>5njb Chain C (length=479) Species: 83333 (Escherichia coli K-12) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LNLVSEQLLAANGLKHQDLFAILGQLAERRLDYGDLYFQSSYHESWVLED
RIIKDGSYNIDQGVGVRAISGEKTGFAYADQISLLALEQSAQAARTIVRD
SGDGKVQTLGAVEHSPLYTSVDPLQSMSREEKLDILRRVDKVAREADKRV
QEVTASLSGVYELILVAATDGTLAADVRPLVRLSVSVLVEEDGKRERGAS
GGGGRFGYEFFLADLDGEVRADAWAKEAVRMALVNLSAVAAPAGTMPVVL
GAGWPGVLLHEAVGHGLEGDFNRRGTSVFSGQVGELVASELCTVVDDGTM
VDRRGSVAIDDEGTPGQYNVLIENGILKGYMQDKLNARLMGMTPTGNGRR
ESYAHLPMPRMTNTYMLPGKSTPQEIIESVEYGIYAPNFGGGQVDITSDK
FVFSTSEAYLIENGKVTKPVKGATLIGSGIETMQQISMVGNDLKLDNGVG
VCGKEGQSLPVGVGQPTLKVDNLTVGGTA
Ligand information
Ligand IDBB2
InChIInChI=1S/C19H35N3O5/c1-4-5-6-8-14(11-16(24)21-27)18(25)20-17(13(2)3)19(26)22-10-7-9-15(22)12-23/h13-15,17,23,27H,4-12H2,1-3H3,(H,20,25)(H,21,24)/t14-,15+,17+/m1/s1
InChIKeyXJLATMLVMSFZBN-VYDXJSESSA-N
SMILES
SoftwareSMILES
CACTVS 3.341CCCCC[CH](CC(=O)NO)C(=O)N[CH](C(C)C)C(=O)N1CCC[CH]1CO
OpenEye OEToolkits 1.5.0CCCCCC(CC(=O)NO)C(=O)NC(C(C)C)C(=O)N1CCCC1CO
ACDLabs 10.04O=C(N1C(CO)CCC1)C(NC(=O)C(CC(=O)NO)CCCCC)C(C)C
CACTVS 3.341
OpenEye OEToolkits 1.5.0
CCCCC[C@H](CC(=O)NO)C(=O)N[C@@H](C(C)C)C(=O)N1CCC[C@H]1CO
FormulaC19 H35 N3 O5
NameACTINONIN;
2-[(FORMYL-HYDROXY-AMINO)-METHYL]-HEPTANOIC ACID [1-(2-HYDROXYMETHYL-PYRROLIDINE-1-CARBONYL)-2-METHYL-PROPYL]-AMIDE
ChEMBLCHEMBL308333
DrugBankDB04310
ZINCZINC000003979014
PDB chain5njb Chain C Residue 502 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB5njb The Origins of Specificity in the Microcin-Processing Protease TldD/E.
Resolution1.5 Å
Binding residue
(original residue number in PDB)
R184 W256 H262 E263 H267 G393 G394 V451 G452 V453 C454 V463
Binding residue
(residue number reindexed from 1)
R182 W254 H260 E261 H265 G391 G392 V449 G450 V451 C452 V461
Annotation score1
Enzymatic activity
Enzyme Commision number 3.4.-.-
Gene Ontology
Molecular Function
GO:0005506 iron ion binding
GO:0005515 protein binding
GO:0008237 metallopeptidase activity
GO:0008270 zinc ion binding
Biological Process
GO:0006508 proteolysis
GO:0016485 protein processing
Cellular Component
GO:0005829 cytosol
GO:1905368 peptidase complex

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:5njb, PDBe:5njb, PDBj:5njb
PDBsum5njb
PubMed28943336
UniProtP0AGG8|TLDD_ECOLI Metalloprotease TldD (Gene Name=tldD)

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