Structure of PDB 5k4w Chain C Binding Site BS02
Receptor Information
>5k4w Chain C (length=321) Species:
5691
(Trypanosoma brucei) [
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
HMPRVLVTGALGQIGTDLSLALRDKFGADSVLVSDVVEPGAKHPLAGLKG
VEKLDCLDSNGFEKLVKEFKPTWMYHLPAIMSVRGEAEPDLAMDINVNTT
RYALELARKYNIRIFIPSTIAAFGDKCGKTMTKDDTIMNPSTVYGVTKVY
TELLGTWYRQKYGVDFRSVRLPGIISAATLPGGGATDYAIHMYHSALLQK
KCVCPVLPYESLPMMYMPDTLNSLVKIMEAPLEKLTRTVYNITGFSFSPS
ELRFSIERCTDRTIEVEYVEGPAQKIANSWPDSLDDSNARNDWGHQVKYD
IDMMSEDMLRQIPILHGLPSL
Ligand information
Ligand ID
THR
InChI
InChI=1S/C4H9NO3/c1-2(6)3(5)4(7)8/h2-3,6H,5H2,1H3,(H,7,8)/t2-,3+/m1/s1
InChIKey
AYFVYJQAPQTCCC-GBXIJSLDSA-N
SMILES
Software
SMILES
ACDLabs 10.04
O=C(O)C(N)C(O)C
OpenEye OEToolkits 1.5.0
CC(C(C(=O)O)N)O
CACTVS 3.341
C[CH](O)[CH](N)C(O)=O
CACTVS 3.341
C[C@@H](O)[C@H](N)C(O)=O
OpenEye OEToolkits 1.5.0
C[C@H]([C@@H](C(=O)O)N)O
Formula
C4 H9 N O3
Name
THREONINE
ChEMBL
CHEMBL291747
DrugBank
DB00156
ZINC
ZINC000000895103
PDB chain
5k4w Chain C Residue 1402 [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
5k4w
Structure and function of L-threonine-3-dehydrogenase from the parasitic protozoan Trypanosoma brucei revealed by X-ray crystallography and geometric simulations.
Resolution
1.72 Å
Binding residue
(original residue number in PDB)
M1081 S1082 T1119 Y1144 G1184 A1185 T1186 W1280
Binding residue
(residue number reindexed from 1)
M81 S82 T119 Y144 G184 A185 T186 W280
Annotation score
5
Enzymatic activity
Enzyme Commision number
1.1.1.103
: L-threonine 3-dehydrogenase.
External links
PDB
RCSB:5k4w
,
PDBe:5k4w
,
PDBj:5k4w
PDBsum
5k4w
PubMed
30198897
UniProt
Q7YW97
[
Back to BioLiP
]