Structure of PDB 5gkd Chain C Binding Site BS02

Receptor Information
>5gkd Chain C (length=726) Species: 368405 (Paraglaciecola chathamensis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ADLLVKTPEAYDQALKKAKPGDDIILANGTWRDFEVLFEAKGNENKPITL
RGQTPGKVFLTGQSNLRLAGEHLIVSGLVFKDGYTPTGEVIAFRRNKDVL
ASHSRVTQVVIDNFSNPEKFEQDSWVMVYGRHNRFDHNHLVGKRNKGVTM
AVRLTTESSQQNHHRIDHNYFGPRPILGSNGGETLRIGTSHHSLTDSFTL
VENNYFDRCNGEVEIISNKSGKNSIRNNVFFESRGTLTLRHGNGNIVENN
VFFGNGVDHTGGIRVINRDQIIRNNYLEGLTGYRFGSGLTVMNGVPNSKI
NRYHQVDNALIENNTLVNVEHIQFAAGSDKERSAAPINSNMNNNLIVNDQ
GTDGITAFDDISGIKFKDNLLNQDAKPSINKGFEQADITMQRHDNGLLYP
EAKTQQKYGVSTQLEPIGKDEVGVSWYPKVEPDVAFGSGKHIAVSPGDNT
LFDAIASAETGDVLVLQAGEYWVSKILSLDKTLTIRAQEKGSAVIFPQRS
TLIEINNKGNLTLDGVYVDATNAPDAAGNTLIRTTRLPMQRNYRLAIKNS
TFENLDINHSYHFFDAGNRSFADYIEVQDSQFKHITGDLFRLNKETDDLG
IYNVEYLTIENSNVSDLQGAIAKVYRGGTDESTFGPHVVMNNNIFNEVGK
GKRNKSAASLILHGTQVNKMTTNEFNNSAPIIFELTVGEPKTWVTGNVFE
GTPEPVVRDLFPLSGATTTISGNTVL
Ligand information
Ligand IDCO3
InChIInChI=1S/CH2O3/c2-1(3)4/h(H2,2,3,4)/p-2
InChIKeyBVKZGUZCCUSVTD-UHFFFAOYSA-L
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0C(=O)([O-])[O-]
ACDLabs 10.04
CACTVS 3.341		[O-]C([O-])=O
FormulaC O3
NameCARBONATE ION
ChEMBL
DrugBankDB14531
ZINC
PDB chain5gkd Chain C Residue 806 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5gkd Novel Molecular Insights into the Catalytic Mechanism of Marine Bacterial Alginate Lyase AlyGC from Polysaccharide Lyase Family 6
Resolution2.194 Å
Binding residue
(original residue number in PDB)		R241 R265 Y304
Binding residue
(residue number reindexed from 1)		R240 R264 Y303
Annotation score3
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:5gkd, PDBe:5gkd, PDBj:5gkd
PDBsum5gkd
PubMed28154171
UniProtA0A1S4NYD7

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