Structure of PDB 5cpk Chain C Binding Site BS02

Receptor Information
>5cpk Chain C (length=106) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEI
LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQ
AVLLPK
Ligand information
>5cpk Chain J (length=145) [Search DNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
atcatttccattcgaagattccattcgaatccattcgaaaatgattacat
tcgaatccattcgaagattccatttgagcctgttcgaaaattccatttga
gtccaaccaatgattcctctcatttccattcaatgattccatgat
Receptor-Ligand Complex Structure
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PDB5cpk Influence of DNA methylation on positioning and DNA flexibility of nucleosomes with pericentric satellite DNA.
Resolution2.632 Å
Binding residue
(original residue number in PDB)		A14 R29 R42 V43 G44 A45 R77
Binding residue
(residue number reindexed from 1)		A2 R17 R30 V31 G32 A33 R65
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0005515 protein binding
GO:0030527 structural constituent of chromatin
GO:0031492 nucleosomal DNA binding
GO:0046982 protein heterodimerization activity
Biological Process
GO:0006325 chromatin organization
GO:0008285 negative regulation of cell population proliferation
GO:0031507 heterochromatin formation
GO:0061644 protein localization to CENP-A containing chromatin
Cellular Component
GO:0000786 nucleosome
GO:0005634 nucleus
GO:0005694 chromosome
GO:0043505 CENP-A containing nucleosome
GO:0070062 extracellular exosome

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5cpk, PDBe:5cpk, PDBj:5cpk
PDBsum5cpk
PubMed26446621
UniProtP04908|H2A1B_HUMAN Histone H2A type 1-B/E (Gene Name=H2AC4)

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