Structure of PDB 4d61 Chain C Binding Site BS02

Receptor Information
>4d61 Chain C (length=222) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DKEWMPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEV
LKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAII
LAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVS
APVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLW
KETVFTKSPYQEFTDHLVKTHT
Ligand information
>4d61 Chain j (length=201) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
aaaaaugugaucuugcuuguaaauacaauuuugagagguuaauaaauuac
aaguagugcuauuuuuguauuuagguuagcuauuuagcuuuacguuccag
gaugccuaguggcagccccacaauauccaggaagcccucucugcgguuau
ucagauuagguagucgaaaaaccuaagaaauuuaccuuaaggcuuccucg
a
<<.............<<<<<<<.<........(((((......>..>>>>
>>>...........>>......<<<<..<<<....>>>......((((..
(..>>>>.<<<<.....>>>>.....)..))))...)))))....[[..(
((.(((.<<<<.))))))..]]...........>>>>.............
.
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB4d61 Cryo-Em of Ribosomal 80S Complexes with Termination Factors Reveals the Translocated Cricket Paralysis Virus Ires.
Resolution9.0 Å
Binding residue
(original residue number in PDB)		I109 Q113 F124 V147 A148 I151
Binding residue
(residue number reindexed from 1)		I53 Q57 F68 V91 A92 I95
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0015935 small ribosomal subunit

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:4d61, PDBe:4d61, PDBj:4d61
PDBsum4d61
PubMed25601755
UniProtG1SWM1|RS2_RABIT Small ribosomal subunit protein uS5 (Gene Name=RPS2)

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