Structure of PDB 3jbw Chain C Binding Site BS02

Receptor Information
>3jbw Chain C (length=622) Species: 7955 (Danio rerio) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GGRPRQHLLSLTRRAQKHRLRDLKNQVKTFAEKEEGGDVKSVCLTLFLLA
LRAGNEHKQADELEAMMQGRGFGLHPAVCLAIRVNTFLSCSQYHKMYRTV
KATSGRQIFQPLHTLRNAEKELLPGFHQFEWQPALKNVSTSWDVGIIDGL
SGWTVSVDDVPADTISRRFRYDVALVSALKDLEEDIMEGLRERALDDSMC
TSGFTVVVKESCDGMGDVSEKHGSGPAVPEKAVRFSFTIMSISIRLEGED
DGITIFQEQKPNSELSCRPLCLMFVDESDHETLTAILGPVVAERKAMMES
RLIISVGGLLRSFRFFFRGTGYDEKMVREMEGLEASGSTYICTLCDSTRA
EASQNMVLHSITRSHDENLERYEIWRKNPFSESADELRDRVKGVSAKPFM
ETQPTLDALHCDIGNATEFYKIFQDEIGEVYQKPNPSREERRRWRSTLDK
QLRKKMKLKPVMRMNGNYARRLMTREAVEAVCELVPSEERREALLKLMDL
YLQMKPVWRSTCPSRDCPDQLCQYSYNSQQFADLLSSMFKYRYDGKITNY
LHKTLAHVPEIVERDGSIGAWASEGNESGNKLFRRFRKMNARQSKTFELE
DILKHHWLYTSKYLQKFMEAHK
Ligand information
>3jbw Chain F (length=50) [Search DNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ctgcagggtttttgttccagtctgtagcactgtgtaagacaggccagatc
Receptor-Ligand Complex Structure
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PDB3jbw Molecular Mechanism of V(D)J Recombination from Synaptic RAG1-RAG2 Complex Structures.
Resolution4.6 Å
Binding residue
(original residue number in PDB)		H464 K465 D620 G623 K638 S745 T746 R795 I820 R870 N872 G873 E981 E984 K988 R991
Binding residue
(residue number reindexed from 1)		H57 K58 D213 G216 K231 S338 T339 R388 I413 R463 N465 G466 E574 E577 K581 R584
Enzymatic activity
Enzyme Commision number 2.3.2.27: RING-type E3 ubiquitin transferase.
3.1.-.-
Gene Ontology
Molecular Function
GO:0004519 endonuclease activity
GO:0043565 sequence-specific DNA binding
GO:0046872 metal ion binding
GO:0061630 ubiquitin protein ligase activity
Biological Process
GO:0033151 V(D)J recombination

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Molecular Function
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Biological Process
External links
PDB RCSB:3jbw, PDBe:3jbw, PDBj:3jbw
PDBsum3jbw
PubMed26548953
UniProtO13033|RAG1_DANRE V(D)J recombination-activating protein 1 (Gene Name=rag1)

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