BioLiP

Receptor Information

>3by0 Chain C (length=174) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

TSDLIPAPPLSKVPLQQNFQDNQFQGKWYVVGLAGNAILREDKDPQKMYA
TIYELKEDKSYNVTSVLFRKKKCDYAIATFVPGSQPGEFTLGNIKSYPGL
TSYLVRVVSTNYNQHAMVFFKKVSQNREYFKITLYGRTKELTSELKENFI
RFSKSLGLPENHIVFPVPIDQCID

Ligand ID

DBS

InChI

InChI=1S/C10H11NO6/c12-4-6(10(16)17)11-9(15)5-2-1-3-7(13)8(5)14/h1-3,6,12-14H,4H2,(H,11,15)(H,16,17)/t6-/m0/s1

InChIKey

VDTYHTVHFIIEIL-LURJTMIESA-N

SMILES

Software	SMILES
OpenEye OEToolkits 1.5.0	c1cc(c(c(c1)O)O)C(=O)NC(CO)C(=O)O
OpenEye OEToolkits 1.5.0	c1cc(c(c(c1)O)O)C(=O)N[C@@H](CO)C(=O)O
CACTVS 3.341	OC[CH](NC(=O)c1cccc(O)c1O)C(O)=O
ACDLabs 10.04	O=C(O)C(NC(=O)c1cccc(O)c1O)CO
CACTVS 3.341	OC[C@H](NC(=O)c1cccc(O)c1O)C(O)=O

Formula

C10 H11 N O6

Name

2-(2,3-DIHYDROXY-BENZOYLAMINO)-3-HYDROXY-PROPIONIC ACID;
2,3,-DIHYDROXYBENZOYLSERINE

PDB chain

3by0 Chain C Residue 302 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

Global view

Local view

Structure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

PDB	3by0 The siderocalin/enterobactin interaction: a link between mammalian immunity and bacterial iron transport.
Resolution	2.572 Å
Binding residue (original residue number in PDB)	S68 A81 F83 Y100 Y106 K125
Binding residue (residue number reindexed from 1)	S65 A78 F80 Y97 Y103 K122
Annotation score	1

Enzyme Commision number

	Molecular Function
GO:0036094	small molecule binding

PDB	RCSB:3by0, PDBe:3by0, PDBj:3by0
PDBsum	3by0
PubMed	18680288
UniProt	P80188\|NGAL_HUMAN Neutrophil gelatinase-associated lipocalin (Gene Name=LCN2)

[Back to BioLiP]

Structure of PDB 3by0 Chain C Binding Site BS02