Structure of PDB 1yrx Chain C Binding Site BS02

Receptor Information
>1yrx Chain C (length=115) Species: 272943 (Cereibacter sphaeroides 2.4.1) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
HMVSCCYRSLAAPDLTLRDLLDIVETSQAHNARAQLTGALFYSQGVFFQW
LEGRPAAVAEVMTHIQRDRRHSNVEILAEEPIAKRRFAGWHMQLSCSEAD
MRSLGLAESRQIVTV
Ligand information
Ligand IDD9G
InChIInChI=1S/C16H33NO2/c1-4-5-6-7-8-9-10-11-12-13-14-17(2,3)15-16(18)19/h4-15H2,1-3H3
InChIKeyDVEKCXOJTLDBFE-UHFFFAOYSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0CCCCCCCCCCCC[N+](C)(C)CC(=O)[O-]
CACTVS 3.341CCCCCCCCCCCC[N+](C)(C)CC([O-])=O
ACDLabs 10.04[O-]C(=O)C[N+](CCCCCCCCCCCC)(C)C
FormulaC16 H33 N O2
NameN-DODECYL-N,N-DIMETHYLGLYCINATE
ChEMBLCHEMBL1232088
DrugBankDB07631
ZINC
PDB chain1yrx Chain C Residue 304 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB1yrx Structure of a Novel Photoreceptor, the BLUF Domain of AppA from Rhodobacter sphaeroides
Resolution2.3 Å
Binding residue
(original residue number in PDB)		F55 Q58 V60 F62
Binding residue
(residue number reindexed from 1)		F41 Q44 V46 F48
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0009882 blue light photoreceptor activity
GO:0071949 FAD binding

View graph for
Molecular Function
External links
PDB RCSB:1yrx, PDBe:1yrx, PDBj:1yrx
PDBsum1yrx
PubMed15924418
UniProtQ53119

[Back to BioLiP]