Structure of PDB 1sds Chain C Binding Site BS02

Receptor Information
>1sds Chain C (length=112) Species: 2190 (Methanocaldococcus jannaschii) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VKFKVPEEIQKELLDAVAKAQKIKKGANEVTKAVERGIAKLVIIAEDVKP
EEVVAHLPYLCEEKGIPYAYVASKQDLGKAAGLEVAASSVAIINEGDAEE
LKVLIEKVNVLK
Ligand information
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB1sds Structure of Protein L7Ae Bound to a K-Turn Derived from an Archaeal Box H/ACA sRNA at 1.8 A Resolution.
Resolution1.8 Å
Binding residue
(original residue number in PDB)		K29 G30 A31 N32 E33 V52 K53 K78 L87 V89 A90 A91 S92
Binding residue
(residue number reindexed from 1)		K25 G26 A27 N28 E29 V48 K49 K74 L83 V85 A86 A87 S88
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0004526 ribonuclease P activity
GO:0005515 protein binding
GO:0019843 rRNA binding
GO:0034512 box C/D sno(s)RNA binding
Biological Process
GO:0000492 box C/D snoRNP assembly
GO:0001682 tRNA 5'-leader removal
GO:0006412 translation
GO:0008033 tRNA processing
GO:0042254 ribosome biogenesis
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0031428 box C/D methylation guide snoRNP complex
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:1sds, PDBe:1sds, PDBj:1sds
PDBsum1sds
PubMed15130481
UniProtP54066|RL7A_METJA Large ribosomal subunit protein eL8 (Gene Name=rpl7ae)

[Back to BioLiP]