Structure of PDB 1qp9 Chain C Binding Site BS02
Receptor Information
>1qp9 Chain C (length=71) Species:
4932
(Saccharomyces cerevisiae) [
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
NRIPLGCTICRKRKVKCDKLRPHCQQCTKTGVAHLCHYMEQTWAEEAEKE
LLKDNELKKLRERVKSLEKTL
Ligand information
>1qp9 Chain H (length=17) [
Search DNA sequence
] [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
taatagcgataatagcg
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
1qp9
Structure of HAP1-PC7 bound to DNA: implications for DNA recognition and allosteric effects of DNA-binding on transcriptional activation.
Resolution
2.8 Å
Binding residue
(original residue number in PDB)
R68 K71 K73
Binding residue
(residue number reindexed from 1)
R11 K14 K16
Binding affinity
PDBbind-CN
: Kd=37.8nM
Enzymatic activity
Enzyme Commision number
?
Gene Ontology
Molecular Function
GO:0000981
DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0003700
DNA-binding transcription factor activity
GO:0008270
zinc ion binding
Biological Process
GO:0006355
regulation of DNA-templated transcription
View graph for
Molecular Function
View graph for
Biological Process
External links
PDB
RCSB:1qp9
,
PDBe:1qp9
,
PDBj:1qp9
PDBsum
1qp9
PubMed
11024163
UniProt
P0CS82
|HAP1_YEASX Heme-responsive zinc finger transcription factor HAP1 (Gene Name=HAP1)
[
Back to BioLiP
]