Structure of PDB 1hw9 Chain C Binding Site BS02
Receptor Information
>1hw9 Chain C (length=389) Species:
9606
(Homo sapiens) [
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SDAEIIAYKLETLIETHERGVSIRRQLLSKKLSEPSSLQYLPYRDYNYSL
VMGACCENVIGYMPIPVGVAGPLCLDEKEFQVPMATTEGCLVASTNRGCR
AIGLGGGASSRVLADGMTRGPVVRLPRACDSAEVKAWLETSEGFAVIKEA
FDSTSRFARLQKLHTSIAGRNLYIRFQSRSGDAMGMNMISKGTEKALSKL
HEYFPEMQILAVSGNYCTDKKPAAINWIEGRGKSVVCEAVIPAKVVREVL
KTTTEAMIEVNINKNLVGSAMAGSIGGYNAHAANIVTAIYIACGQDAAQN
VGSSNCITLMEASGPTNEDLYISCTMPSIEIGTVGGGTNLLPQQACLQML
GVQGACKDNPGENARQLARIVCGTVMAGELSLMAALAAG
Ligand information
Ligand ID
SIM
InChI
InChI=1S/C25H40O6/c1-6-25(4,5)24(30)31-21-12-15(2)11-17-8-7-16(3)20(23(17)21)10-9-18(26)13-19(27)14-22(28)29/h7-8,11,15-16,18-21,23,26-27H,6,9-10,12-14H2,1-5H3,(H,28,29)/t15-,16-,18+,19+,20-,21-,23-/m0/s1
InChIKey
XWLXKKNPFMNSFA-HGQWONQESA-N
SMILES
Software
SMILES
CACTVS 3.352
CCC(C)(C)C(=O)O[C@H]1C[C@@H](C)C=C2C=C[C@H](C)[C@H](CC[C@@H](O)C[C@@H](O)CC(O)=O)[C@@H]12
OpenEye OEToolkits 1.7.0
CCC(C)(C)C(=O)O[C@H]1C[C@H](C=C2[C@H]1[C@H]([C@H](C=C2)C)CC[C@H](C[C@H](CC(=O)O)O)O)C
CACTVS 3.352
CCC(C)(C)C(=O)O[CH]1C[CH](C)C=C2C=C[CH](C)[CH](CC[CH](O)C[CH](O)CC(O)=O)[CH]12
ACDLabs 10.04
O=C(O)CC(O)CC(O)CCC2C(C=CC1=CC(CC(OC(=O)C(C)(C)CC)C12)C)C
OpenEye OEToolkits 1.7.0
CCC(C)(C)C(=O)OC1CC(C=C2C1C(C(C=C2)C)CCC(CC(CC(=O)O)O)O)C
Formula
C25 H40 O6
Name
Simvastatin acid;
DIMETHYL-COMPACTIN
ChEMBL
CHEMBL1201391
DrugBank
DB14714
ZINC
ZINC000003833877
PDB chain
1hw9 Chain C Residue 1 [
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Receptor-Ligand Complex Structure
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PDB
1hw9
Structural mechanism for statin inhibition of HMG-CoA reductase.
Resolution
2.33 Å
Binding residue
(original residue number in PDB)
R590 V683 S684 D690 K692
Binding residue
(residue number reindexed from 1)
R119 V212 S213 D219 K221
Annotation score
1
Binding affinity
MOAD
: ic50=11nM
Enzymatic activity
Catalytic site (original residue number in PDB)
E559 K691 D767
Catalytic site (residue number reindexed from 1)
E88 K220 D296
Enzyme Commision number
1.1.1.34
: hydroxymethylglutaryl-CoA reductase (NADPH).
Gene Ontology
Molecular Function
GO:0004420
hydroxymethylglutaryl-CoA reductase (NADPH) activity
GO:0016616
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0050661
NADP binding
Biological Process
GO:0008299
isoprenoid biosynthetic process
GO:0015936
coenzyme A metabolic process
Cellular Component
GO:0005789
endoplasmic reticulum membrane
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Molecular Function
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Biological Process
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Cellular Component
External links
PDB
RCSB:1hw9
,
PDBe:1hw9
,
PDBj:1hw9
PDBsum
1hw9
PubMed
11349148
UniProt
P04035
|HMDH_HUMAN 3-hydroxy-3-methylglutaryl-coenzyme A reductase (Gene Name=HMGCR)
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