Structure of PDB 4v7j Chain By Binding Site BS02
Receptor Information
>4v7j Chain By (length=94) Species:
83333
(Escherichia coli K-12) [
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
AYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLAGMPDCY
KIKLRSSGYRLVYQVIDEKVVVFVISVGKAERSEVYSEAVKRIL
Ligand information
>4v7j Chain Bx (length=12) [
Search RNA sequence
] [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
aaaauguagaaa
............
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
4v7j
The structural basis for mRNA recognition and cleavage by the ribosome-dependent endonuclease RelE.
Resolution
3.3 Å
Binding residue
(original residue number in PDB)
R56 E82 S84 Y87
Binding residue
(residue number reindexed from 1)
R55 E81 S83 Y86
Enzymatic activity
Enzyme Commision number
3.1.-.-
Gene Ontology
Molecular Function
GO:0000976
transcription cis-regulatory region binding
GO:0001217
DNA-binding transcription repressor activity
GO:0004519
endonuclease activity
GO:0004521
RNA endonuclease activity
GO:0005515
protein binding
GO:0019843
rRNA binding
GO:0043022
ribosome binding
GO:0097351
toxin sequestering activity
Biological Process
GO:0006355
regulation of DNA-templated transcription
GO:0006402
mRNA catabolic process
GO:0017148
negative regulation of translation
GO:0034198
cellular response to amino acid starvation
GO:0040008
regulation of growth
GO:0044010
single-species biofilm formation
GO:0045892
negative regulation of DNA-templated transcription
GO:0046677
response to antibiotic
Cellular Component
GO:0032993
protein-DNA complex
GO:0110001
toxin-antitoxin complex
View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB
RCSB:4v7j
,
PDBe:4v7j
,
PDBj:4v7j
PDBsum
4v7j
PubMed
20005802
UniProt
P0C077
|RELE_ECOLI mRNA interferase toxin RelE (Gene Name=relE)
[
Back to BioLiP
]