Structure of PDB 8q87 Chain Bh Binding Site BS02

Receptor Information
>8q87 Chain Bh (length=122) Species: 9031 (Gallus gallus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVR
KSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEEN
LKTKKQQRKERLYPVRKYAIKA
Ligand information
>8q87 Chain B8 (length=157) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
caacucuuagcgguggaucacucggcucgugcgucgaugaagaacgcagc
uagcugcgagaauuaaugugaauugcaggacacauugaucaucgacacuu
cgaacgcacuugcggccccggguuccucccggggcuacgccugccugagc
gucgcuu
.........................................<<<<<<<<<
....>>>>.....<.<<<......>>.............>>>..>...>>
>....<<....>><<<<<<<<<.....>>>>>>>>>..............
.......
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8q87 Structural insights into inactive ribosome complexes derived from cold-treated chick embryo cells
Resolution2.4 Å
Binding residue
(original residue number in PDB)
A2 K3 K5 A6 R7 K35 S42 L44 S45 K46 R48 V49 R51 K52 A55 R56 L58 T59 N62 Q63 K66 R70 L81 K86 T88 R89 R92
Binding residue
(residue number reindexed from 1)
A1 K2 K4 A5 R6 K34 S41 L43 S44 K45 R47 V48 R50 K51 A54 R55 L57 T58 N61 Q62 K65 R69 L80 K85 T87 R88 R91
External links
PDB RCSB:8q87, PDBe:8q87, PDBj:8q87
PDBsum8q87
PubMed
UniProtQ98TF7|RL35_CHICK Large ribosomal subunit protein uL29 (Gene Name=RPL35)

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