Structure of PDB 8aa5 Chain BP1 Binding Site BS02

Receptor Information

>8aa5 Chain BP1 (length=445) Species: 34078 (Scytonema hofmannii)

KNVIATQLSEEAQVKLEVIQSLLEPCDRTTYGQKLREAAEKLNVSLRTVQ
RLVKNWEQDGLVGLTQTSRADKGKHRIGEFWENFITKTYKEGNKGSKRMT
PKQVALRVEAKARELKDSKPPNYKTVLRVLAPILEKQQKAKSIRSPGWRG
TTLSVKTREGKDLSVDYSNHVWQCDHTRVDVLLVDQHGEILSRPWLTTVI
DTYSRCIMGINLGFDAPSSGVVALALRHAILPKRYGSEYKLHCEWGTYGK
PEHFYTDGGKDFRSNHLSQIGAQLGFVCHLRDRPSEGGVVERPFKTLNDQ
LFSTLPGYTGSNVQERPEDAEKDARLTLRELEQLLVRYIVDRYNQSIDAR
MGDQTRFERWEAGLPTVPVPIPERDLDICLMKQSRRTVQRGGCLQFQNLM
YRGEYLAGYAGETVNLRFDPRDITTILVYRQENNQEVFLTRAHAQ

Ligand information

>8aa5 Chain J (length=28)

atgtacagtgactaattatatgtcgttg

Receptor-Ligand Complex Structure

Structure summary

• PDB: 8aa5 Structure of the TnsB transposase-DNA complex of type V-K CRISPR-associated transposon.
• Resolution: 2.46 Å
• Binding residue (original residue number in PDB): V74 S75 T78 R81 R99 A100 R106 T130 K132 Y153 K154 L157
• Binding residue (residue number reindexed from 1): V44 S45 T48 R51 R69 A70 R76 T100 K102 Y123 K124 L127

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Sat Nov 16 18:31:45 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1435     title=pdb2title(pdbid)

   1436     if bs.startswith("BS"):

=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

   1438     else:

   1439         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '8aa5', asym_id = 'BP1', bs = 'BS02', title = 'Structure of the TnsB transposase-DNA complex of type V-K CRISPR-associated transposon.'

 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='8aa5', asym_id='BP1', bs='BS02', title='Structure of the TnsB transposase-DNA complex of type V-K CRISPR-associated transposon.')

   1295         display_ec(ec,csaOrig,csaRenu)

   1296     if go:

=> 1297         display_go(go,uniprot,pdbid,asym_id)

   1298     return pubmed,uniprot

   1299 

global display_go = <function display_go>, go = '0003676,0015074', uniprot = '', pdbid = '8aa5', asym_id = 'BP1'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003676,0015074', uniprot='', pdbid='8aa5', asym_id='BP1')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>