Structure of PDB 4v66 Chain BN Binding Site BS02 |
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| >4v66 Chain BB (length=2903)
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gguuaagcgacuaagcguacacgguggaugcccuggcagucagaggcgau
gaaggacgugcuaaucugcgauaagcgucgguaaggugauaugaaccguu
auaaccggcgauuuccgaauggggaaacccaguguguuucgacacacuau
cauuaacugaauccauagguuaaugaggcgaaccgggggaacugaaacau
cuaaguaccccgaggaaaagaaaucaaccgagauucccccaguagcggcg
agcgaacggggagcagcccagagccugaaucaguguguguguuaguggaa
gcgucuggaaaggcgcgcgauacagggugacagccccguacacaaaaaug
cacaugcugugagcucgaugaguagggcgggacacgugguauccugucug
aauauggggggaccauccuccaaggcuaaauacuccugacugaccgauag
ugaaccaguaccgugagggaaaggcgaaaagaaccccggcgaggggagug
aaaaagaaccugaaaccguguacguacaagcagugggagcacgcuuaggc
gugugacugcguaccuuuuguauaaugggucagcgacuuauauucuguag
caagguuaaccgaauaggggagccgaagggaaaccgagucuuaacugggc
guuaaguugcaggguauagacccgaaacccggugaucuagccaugggcag
guugaagguuggguaacacuaacuggaggaccgaaccgacuaauguugaa
aaauuagcggaugacuuguggcugggggugaaaggccaaucaaaccggga
gauagcugguucuccccgaaagcuauuuagguagcgccucgugaauucau
cuccggggguagagcacuguuucggcaagggggucaucccgacuuaccaa
cccgaugcaaacugcgaauaccggagaauguuaucacgggagacacacgg
cgggugcuaacguccgucgugaagagggaaacaacccagaccgccagcua
aggucccaaagucaugguuaagugggaaacgaugugggaaggcccagaca
gccaggauguuggcuuagaagcagccaucauuuaaagaaagcguaauagc
ucacuggucgagucggccugcgcggaagauguaacggggcuaaaccaugc
accgaagcugcggcagcgacgcuuaugcguuguuggguaggggagcguuc
uguaagccugcgaaggugugcugugaggcaugcuggagguaucagaagug
cgaaugcugacauaaguaacgauaaagcgggugaaaagcccgcucgccgg
aagaccaaggguuccuguccaacguuaaucggggcagggugagucgaccc
cuaaggcgaggccgaaaggcguagucgaugggaaacagguuaauauuccu
guacuugguguuacugcgaaggggggacggagaaggcuauguuggccggg
cgacgguugucccgguuuaagcguguaggcugguuuuccaggcaaauccg
gaaaaucaaggcugaggcgugaugacgaggcacuacggugcugaagcaac
aaaugcccugcuuccaggaaaagccucuaagcaucagguaacaucaaauc
guaccccaaaccgacacagguggucagguagagaauaccaaggcgcuuga
gagaacucgggugaaggaacuaggcaaaauggugccguaacuucgggaga
aggcacgcugauauguaggugaggucccucgcggauggagcugaaaucag
ucgaagauaccagcuggcugcaacuguuuauuaaaaacacagcacugugc
aaacacgaaaguggacguauacggugugacgccugcccggugccggaagg
uuaauugaugggguuagcgcaagcgaagcucuugaucgaagccccgguaa
acggcggccguaacuauaacgguccuaagguagcgaaauuccuugucggg
uaaguuccgaccugcacgaauggcguaaugauggccaggcugucuccacc
cgagacucagugaaauugaacucgcugugaagaugcaguguacccgcggc
aagacggaaagaccccgugaaccuuuacuauagcuugacacugaacauug
agccuugauguguaggauaggugggaggcuuugaaguguggacgccaguc
ugcauggagccgaccuugaaauaccacccuuuaauguuugauguucuaac
guugacccguaauccggguugcggacagugucugguggguaguuugacug
gggcggucuccuccuaaagaguaacggaggagcacgaagguuggcuaauc
cuggucggacaucaggagguuagugcaauggcauaagccagcuugacugc
gagcgugacggcgcgagcaggugcgaaagcaggucauagugauccggugg
uucugaauggaagggccaucgcucaacggauaaaagguacuccggggaua
acaggcugauaccgcccaagaguucauaucgacggcgguguuuggcaccu
cgaugucggcucaucacauccuggggcugaaguaggucccaaggguaugg
cuguucgccauuuaaagugguacgcgagcuggguuuagaacgucgugaga
caguucggucccuaucugccgugggcgcuggagaacugaggggggcugcu
ccuaguacgagaggaccggaguggacgcaucacugguguucggguuguca
ugccaauggcacugcccgguagcuaaaugcggaagagauaagugcugaaa
gcaucuaagcacgaaacuugccccgagaugaguucucccugacccuuuaa
ggguccugaaggaacguugaagacgacgacguugauaggccgggugugua
agcgcagcgaugcguugagcuaaccgguacuaaugaaccgugaggcuuaa
ccu |
<<<<<<<<.......<<.<<<<.<..........<<<<<<<<<<.<<...
...<<<...................<<<<<....<<<.......>>>...
.....>>>>>...>>>....<<......>><<<<<<<....>>>>>>>.<
<<<<<<<<<......>.>>>>>>>>>.>>...<<<<.<............
........>>>>..>........<<....>>...<<<<<...........
.......>>>>>...<<<..<<<<......<<<<<<<<<<<...<.....
.<<<........>>>.........<<<.......>>>.....>.....>>
>>>>>>>>>...>>>>........<...<<.............>>...>.
......<<<<..(((.>>.>>..>>>.......>.>>>>>>>.>>.....
.................................<<<<.....>>>>....
...............>.>>>>.>>.........<<....<<<<......>
>>>....>>...................<<........<<.....<<<<<
<....<...<<.....>>...>.....<<....>>..<<<.......>>>
.....>>>>>>.....>>..<<.....<<<...............<....
<<<...<<<<<<......>>>>>>.>>...>...................
................>.........<<.......>>.........>>>.
.......>>..<<<<<........<<....>>.....<<<<<<<...<<<
<<<<<.<....<<<...<<..<<<<...<<<<<<<.....>>>>>.>>..
.>>>>..>>..>>.>.....>>>>>>.>>>...>>>>>>>..........
<..<........>..>........................<<<<.<<...
.....(......<<<<<<...........<<...<<<<..<<......<.
<<<<<.<<<..<<<.........>>>..>>>........<<<......>>
>..>>>>>.>..>>..>>>>..>>............)......>>>>>>.
.......>>>>>>.<<<<<<<<....>>>>>>>>......>>>>>.<..<
<<....<.............<<....>>..........>...>>>...>.
.........>>................<<<<.......>>>>..<<<<..
.............<<<<<...............>>>>.>.....<<..<<
<...<<<...<<<....>>>...>>>...>>>..<<<<..........>>
>>..<<<<<<<<<<<<<...<<<<....<<<<..<<<..<<<<<.<<<<<
....[[....>>>>>.....<<<.....<<<<<<<<<<<.<<.....>>>
>>>>>>>..>>>.....>>>........<<<<<....>>>>>....>>>>
>...>>>...>>.>>........>>>>...>>....>>>>>>>>>>>..>
>.........................<<.........>>..>>>>...<<
.........<<......................<<...............
..>>..<<<<<<.....<.<...<<<<.....>>>>...>.>...>>>>>
>............<.<.<<.........................<<<<..
....................>>>>.....<<<<...<....<<<<<..<<
.........<<<<<<.<<....>>..>>>>>>.........>>>>>>>..
...>.<<<<<<.......>>>>>>......................<...
........>............>>>>.......>>.>.>..........>>
......>>..................................<<<<.<..
......................<<....<...<<<.<<<<..<<<<<<<<
<<<.<<<............<<<<<..<<.......<<<<<<<......>>
>>>>>....>>............>>>>>...>>>.>>>>>>>>>>>...<
<<.<<<<<.......>>>>>>>>.....>>>>.>>>....>....<<<..
.....>>>.<<<<<...........>>>>>........((.[((.....<
<<<.........>>>>...........<<<.......)).]))...<<<<
...<<<....>>>...>>>>..............>>>........<<<<<
<.<<...)))..>>>>>>>>..............>>..............
....<......<<<<<...<.........>...>>>>>.......>....
......<..<.........<<<..<<<<......>>.>>...>>>..<<<
.......>>>.................>....>....<<..<<......>
>...>>.............>.>>>>....<<<<<<<...<<<<...<<<<
<<...............>>>>>.>..<<<<....<<<.....<<<..<<<
..]]..>>>....>>>.....>>>..>>>>.....<<....<<<<<....
.......>>>>>....>>..>>>>.......>>>>>>>..<<<<<<...>
>>>>>.....<<.......................<..<<<<<..<<...
.<<<<<....>>>>>...>>...>>>>>...>.....>>.....>>>>>>
>>. |
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| PDB | 4v66 The Structure of the E. coli Ribosome Before and After Accommodation: Implications for Proofreading |
| Resolution | 9.0 Å |
Binding residue
(original residue number in PDB) | R12 R13 H14 V15 V16 K17 L23 K25 F29 L32 E34 K38 S39 G41 R42 N44 N45 G46 R47 I48 T50 R51 H52 I53 G54 G56 H57 K58 Q59 A60 Y61 R62 V64 F66 K67 P74 Y82 P84 R86 K96 D97 G98 R100 M145 K146 K149 Q152 L153 A154 R155 G158 T159 R176 S177 G178 R181 M200 K206 A207 A209 R211 W212 R213 R216 V219 R220 G221 T222 M224 N225 P226 P230 H231 G232 G233 E235 R237 N238 F239 G240 K241 P243 V244 T245 P246 W247 V249 Q250 T251 K252 G253 K254 K255 T256 R257 N259 K260 T262 R268 R269 |
Binding residue
(residue number reindexed from 1) | R10 R11 H12 V13 V14 K15 L21 K23 F27 L30 E32 K36 S37 G39 R40 N42 N43 G44 R45 I46 T48 R49 H50 I51 G52 G54 H55 K56 Q57 A58 Y59 R60 V62 F64 K65 P72 Y80 P82 R84 K94 D95 G96 R98 M143 K144 K147 Q150 L151 A152 R153 G156 T157 R174 S175 G176 R179 M198 K204 A205 A207 R209 W210 R211 R214 V217 R218 G219 T220 M222 N223 P224 P228 H229 G230 G231 E233 R235 N236 F237 G238 K239 P241 V242 T243 P244 W245 V247 Q248 T249 K250 G251 K252 K253 T254 R255 N257 K258 T260 R266 R267 |
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| Enzyme Commision number |
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