Structure of PDB 4v4w Chain BM Binding Site BS02

Receptor Information
>4v4w Chain BM (length=113) Species: 562 (Escherichia coli) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KKSARIRRATRARRKLQELGATRLVVHRTPRHIYAQVIAPNGSEVLVAAS
TVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGR
VQALADAAREAGL
Ligand information
>4v4w Chain B9 (length=108) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ggcggccguagcgcgguggucccaccugaccccaugccgaacucagaagu
gaaacgccguagcgccgaugguaguguggggucuccccaugcgagaguag
gaacugcc
<<<<<.....<<<<<<<.....<<<<<<<.............>>>>..>>
>....>>>>>.>>.<<.<<....<<<<<<<<...>>>>>>>>....>>.>
>..>>>>>
Receptor-Ligand Complex Structure
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PDB4v4w Elongation arrest by SecM via a cascade of ribosomal RNA rearrangements
Resolution15.0 Å
Binding residue
(original residue number in PDB)		R33 N43 E46 Y64 F97 R102
Binding residue
(residue number reindexed from 1)		R31 N41 E44 Y62 F95 R100
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0008097 5S rRNA binding
GO:0019843 rRNA binding
Biological Process
GO:0002181 cytoplasmic translation
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Biological Process
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Cellular Component
External links
PDB RCSB:4v4w, PDBe:4v4w, PDBj:4v4w
PDBsum4v4w
PubMed16713583
UniProtP0C018|RL18_ECOLI Large ribosomal subunit protein uL18 (Gene Name=rplR)

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