Structure of PDB 4v7h Chain BG Binding Site BS02

Receptor Information
>4v7h Chain BG (length=113) Species: 5541 (Thermomyces lanuginosus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ERLTKEAAAVAEGKSKQDASPKPYAVKYGLNHVVALIENKKAKLVLIAND
VDPIELVVFLPALCKKMGVPYAIVKGKARLGTLVNQKTSAVAALTEVRAE
DEAALAKLVSTID
Ligand information
>4v7h Chain B5 (length=3170) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
guuugaccucaaacagguaggaguacccgcugaacuuaagcauaucaaua
agcggaggaaaagaaaccaaccgggauugccuuaguaacggcgagugaag
cggcaaaagcucaaauuugaaaucugguaccuucggugcccgaguuguaa
uuuggagagggcaacuuuggggccguuccuugucuauguccuuggaacag
gacgucauagggggugagaaucccgugugcgaggagugcgguucuuugua
aagugccuucgaagagucgaguuguuugggaaugcagcucuaagugggug
gaaauucaucuaaagcuaaauauuggcgagagaccgauagcgaacaagua
cagugauggaaagaugaaaagaacuuugaaaagagagugaaaaaguacgu
gaaauuguugaaagggaagggcauuugaucacaugguguuuugugcccuc
ugcuccuuguggguaggggaaucucgcauuucacugggccagcaucaguu
uugguggcaggauaaacccauaggaauguagcuugccucgguaaguauua
uagccugugggaauacugccagcugggacugagugaaaugacguaaguca
aggaugcuggcauaaugguuauaugccgcccgucuugaaacacggaccaa
ggagucuaacgucuaugcgaguguuuggguaaaccauacgcguaaugaaa
gugagcguagguuggggccucgcaagaggugcacaaucgaccgauccuga
ugucuucggauggauuugaguaagagcauagcuguugggacccgaaagau
ggugaacuaugccugaauagggugaagccagaggaaacucugguggaggc
ucguagcgguuugacgugcaaaucgaucgucgaauuuggguauaggggcg
aaagacuaaucgaaccaucuaguagcugguuccugccgaaguuucccuca
ggauagcacgaagcucguuuuaugagguaagcaaugauuagaggucgggg
ucgaaagaccuugaccuauucucaaacuuuaaauauguaagaaguccuug
uuacuuaauugaacguggacauuugaaugagagcuuuuagugggccauuu
uugguaagcagaacuggcgaugcgggaugaaccgaacguagaguuaaggu
gccggaauacacgcucaucaacaaaagguguuaguucaucuagacagccg
gacgguggccauggaagucggaauccgcuaaggaguguguaacaacucac
cggccgaaugaacuagcccugaaaauggauggcgccaagcguguuaccua
uacucuaccgucagggugcccugacgaguaggcaggcguggaggucguga
cgaagccugaccguaaggucgggucgaacggccucuagugcagaucuugg
ugguaguagcaaauauucaaaugagaacuuugaagacugaagggggaaag
guuccacgucaacagcaguuggacguggguuagucgauccuaagagaugg
ggaagcuccguuucaaaggccugauuuuaugcaggccaccaucgaaggga
auccgguuaagauuccggaaccuggugguucuucacgguaacguaacuga
auguggagacgucgcgagcccugggaggaguuaucuuuucuucuuaacag
cuuaucacccgaauugguuuauccggaauggggucuuauggcuggaagag
gccagcaccuuugcuggcuccggugcgcuugacggccgugaaaauccaca
ggaaggaauaguuuucaugccaggucguacugauaaccgcagcaggucuc
caaggugaacagccucuaguugauagaauaaugugauaagggaagucggc
aaaauagauccguaacuucgggauaaggauuggcucuaaguuagaacugg
uacggacaaggggaaucugacugucuaauuaaaacauagcauugcgaugg
ucaaaagugauguugacgcaaugugauuucugcccagugcucgaauguca
aagugaagaaauucaaccaagcgcggguaaacggcgggaguaacuaugac
ucucuuaagguagccaaaugccucgucaucuaauuagugacgcgcaugaa
uggauuaacgagauucccacugucccuaucuacuaucuagcgaaaccaca
gccaagggaacgggcuuggcagaaucagcggggaaagaagacccuguuga
gcuugacucuaguuugacauugugaagagacauagaggguguagaauaag
ugggagcuucggcgccagugaaauaccacuaccuuuauguuucuuuacuu
auucaaugaagcggagcuggaauuaauuuuccacauccuuguguauaggg
ucccauucggggcugauccggguugaagacauugucagguggggaguuug
gcuggggcggccaucuguuaaacgauaacgcagauguccuaaggggggcu
cauggagaacagaaaucuccaguagaacaaaaggguaaaagcccccuuga
uuuugauuuucgugugaauacaaaccaugaaaguguggccuaucgauccu
uuagccucgaauuugaggcuagaggugccagaaaaguuaccacagggaua
acuggcuuguggcagucaagcguucauagcgacauugcuuuuugauucuu
cgaugucggcucuuccuaucauaccgaagcagaauucgguaagcguugga
uuguucacccacuaauagggaacgugagcuggguuuagaccgucgugaga
cagguuaguuuuacccuacugaugaauguuaccgcaauaguaauugaacu
uaguacgagaggaacaguucauucggauaauugguuuuugcggcugucug
aucaggcauugccgcgaagcuacauccgcuggauuauggcugaacgccuc
uaagucagaauccaugcuagaacgcggugauuucuuugcuccacacaaua
uguaccuuuuguauaauggcguccuuguggcgucuaccuuuuguauaaug
cuagcaacggugcacuuggcggaaaggccuugggugcuugcuggcgugaa
auugaacuauuuugcguggggaaaaucauuuguauacgacuuagauguac
aagggguauuguaagcaguagaguagccuuguuguuacgaucugcugaga
uuaccuuuugucugauuugu
.........................<<<<<<...................
>>>>>..>........<<....>>...<<<<......<<.....>>....
.>>>>...<<<....<......<<.<<<<<<...>>>>>>.>>......>
.......<<<<<<.<<<<<<<<<<<<<<<<<<<.....<<<<......>>
>>.((......<<<.....))>>>....>>>>>>>..>>>>>>>>....>
>>>>>>>>>.........<<<<..............>>>>.....<<<..
.(((....>>>..>>>..................................
<<....>>...............<<<<....>>>>...............
...................<<<<<..<.<......<<<...<.....<(<
<<<<<.....>>>>>>>.)........>...>>>......<<<<<<<<<<
<.<<<<<<<<........<<<<<<......<<<<<<<..>>>>>>>....
...>>>>>>......>>>>>.>>>.>>>>>>>.......<<<....>>>.
....>>>>.........>.>..>>>>>...<<<........>>>..<<<<
<......<<<<.<<<<<<....<(.<<<.....>>>..>)..........
.........<<<<<....<<<....>>>.....>>>>>.<<<<<<<<...
<<....>>...>>>.>>>.>>....>>>>>>.>>>>....<<.<...<<<
<<<.....<<<<<<<<<...<.....<<<<<<<....>>>>>>>......
>....<<<<.<<<<........>>>>>>>>....>>>>>>>>>....<..
.....>.......>>>>>>......>.>>..<<<<<<......<<<....
>>>..<<..<.<......<<<<<<...<<<<...<<...<.<<..<<<<<
<<....>>>>>>>..>>.>...>>..>>.>>....>>>>>>...<<<.<<
<..<......>.>>>.>>>...............>>...>>..<<<<.<<
<.........>>>.>>>>....<<<......>>>...<<<<<<...<<<<
((......<<<<<.<..........<<<..<<<<<<<<<.......<<<.
..<<....<<.........>>....>>.........<<......>>....
.>>>...>>>>>>>>>.>>>...........)).....>>>>>>.>>>>.
..>>>>>><<.<<<<....>>>>.>>....>>>>>>...<<<...<<<..
....<<<<<<<......>>>>>>>...>>>...>>>.........>>>>>
........<<.....<<<<<<.......>>>>>>.<<<<...<<<<..<<
...<<<<<<...<<.....>>.>>>>>>....<<((....<......<.<
<<....>>>>.......<<<<<<........>>>>>>.........>...
..<<<<........>>>>.>><<<<<<<......<<<....>>>......
..........<<<<...<...<.<<<<<<......[..>>>>>><..<<<
<............<.<.......>.>..............>>>>....>.
.<<<<<<....>>>>>>....>.....>....>>>>..............
..............>>>>.>.>>..))..>>.....<<......>>.>>>
>.<<<<.....>>>>.>>>>.....<<.....<.<<<<.<<.........
......<<<<<...............>>>>>.<.<<<.....>>>..>..
..........<<<<<<<<...<<<.........>>>..<<..<<<.....
<<<....>>>.......>>>..>>....<...<<..<<<<<<<....<..
....................>..>>>>>..>>>>.<<<<<.........>
>>>>........<.................................>...
..>......>.>>>>>>>.....>>.>>>>..>..>>..>>.........
.<<<<<........>>>>>....<<<<<..<<<.<<......<<<<.<<.
.<<..<<<<<.<<<<<<<<..<<<<<<<<<<<<<<...............
.<<......................>>.......>>>>>>>>>>>>>>..
.<<<<......<<<<...<<<<......>>>>..................
<<<......>>>....>>>>...>>>>.....>>>>>>>>..>>>>>...
<<<.....>>>...<<<<...........>>>>.........<.<<<<<.
..<<<<<<.......>>>>>>.....<<..[.((>>....>>>>.>>...
<<<...<<<......>>>...>>>..............))].........
<<<<..<....)))..>.>>>>............>>....>>>>>>....
....<.....<<<<<....<<.......>>....>>>>>......>....
.......<<<...<<<<..<.<<<<<<<......>>>>>>>...>.<<<.
........>>>.....>>>>.......>>>.......<<<<<<<....>>
>.>>>>....>>..>>>.>>>>>......<<<......<<<...<<<<<.
................>>>>>...<<<.....<.<..<<<<<<...<<<.
]..>>>.....>>>>>>.>.>...>>>...<<....<<<<<.........
..>>>>>....>>..>>>........>>>...........<.<<.<<<..
...................<<<.......>>>.................<
<<<<<<<..<<<...<.<<........>>..>..>>>>>>>>>>>.....
..........>>.>.>>>.....<<<..<..<.......>..>......<
<<<<<<.<<.....<<<<....<<<<<......>>>>>...>>>>....>
>..>>>>>>>....>>>...
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB4v7h Comprehensive molecular structure of the eukaryotic ribosome.
Resolution8.9 Å
Binding residue
(original residue number in PDB)
K133 Y134 G135 L136 N137 H138 A141 L142 I143 E144 K147 D158 L162 F165 L169 K172 M173 K183 R185 Q192 K193 T194 S195
Binding residue
(residue number reindexed from 1)
K27 Y28 G29 L30 N31 H32 A35 L36 I37 E38 K41 D52 L56 F59 L63 K66 M67 K77 R79 Q86 K87 T88 S89
Gene Ontology
--> -->
 
 
UnboundLocalError
Python 3.6.8: /usr/bin/python3
Mon Feb 17 08:15:49 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '4v7h', asym_id = 'BG', bs = 'BS02', title = 'Comprehensive molecular structure of the eukaryotic ribosome.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='4v7h', asym_id='BG', bs='BS02', title='Comprehensive molecular structure of the eukaryotic ribosome.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0042254,1990904', uniprot = '', pdbid = '4v7h', asym_id = 'BG'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0042254,1990904', uniprot='', pdbid='4v7h', asym_id='BG')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>