Structure of PDB 6lqq Chain BE Binding Site BS02

Receptor Information
>6lqq Chain BE (length=865) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KNSKIFSPFRIIGNVSNGVPFATGTLGSTFYIVTCVGKTFQIYDANTLHL
LFVSEKETPSSIVALSAHFHYVYAAYENKVGIYKRGIEEHLLELETDANV
EHLCIFGDYLCASTDDNSIFIYKKSDPQDKYPSEFYTKLTVTEIQGGEIV
SLQHLATYLNKLTVVTKSNVLLFNVRTGKLVFTSNEFPDQITTAEPAPVL
DIIALGTVTGEVIMFNMRKGKRIRTIKIPQSRISSLSFRTDGSSHLSVGT
SSGDLIFYDLDRRSRIHVLKNIHRESYGGVTQATFLNGQPIIVTSGGDNS
LKEYVFDPSLSQGSGDVVVQPPRYLRSRGGHSQPPSYIAFADSQSHFMLS
ASKDRSLWSFSLRKDAQSQEMSQRLHKKQDGGRVGGSTIKSKFPEIVALA
IENARIGEWENIITAHKDEKFARTWDMRNKRVGRWTFDTTDDGFVKSVAM
SQCGNFGFIGSSNGSITIYNMQSGILRKKYKLHKRAVTGISLDGMNRKMV
SCGLDGIVGFYDFNKSTLLGKLKLDAPITAMVYHRSSDLFALALDDLSIV
VIDAVTQRVVRQLWGHSNRITAFDFSPEGRWIVSASLDSTIRTWDLPTGG
CIDGIIVDNVATNVKFSPNGDLLATTHVTGNGICIWTNRAQFKTVSTRTI
DELNDIDFNTYTSLEQIDKELLTLSIGPRSKMNTLLHLDVIRKRSKPKEA
PKKSEKLPFFLQLSGEKSVREGIAHETPEEFKVTGRLGFESHFTKQLREG
SQSKDYSSLLATLINFSPAAVDLEIRSLNSFEPFDEIVWFIDALTQGLKS
NKNFELYETFMSLLFKAHGDVIHANNKNQDIASALQNWEDVHKKEDRLDD
LVKFCMGVAAFVTTA
Ligand information
>6lqq Chain 5A (length=375) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ugcgaaagcaguugaagacaaguggcuugucguucguuaaaauggccucg
ucaaacggugguacagcguguuuaauugacauggguugauaaccugaaca
gucucaucguggccauuggugagcagcgaaggauuugguggauuacuagc
uaauagcaaucuauuucaaagaauucaaacuugggggaaugccuuguuga
auagccggucgcaagacugugauucuucaaguguaaccuccucucuauca
aacguaccgguaucuguuuggugggaaacucaaagagugcuaugguaugg
ugacggagugcgcuggucaagaguguaaaagcuuuuugaacagagagcau
uuccggcagcagagauuucagcugu
<<<....>>>...<<<<<<<<<<.>>>>>>>.>>>..............<
<<<<<<<.<<...>>.>>>......>>>>>..<<<<<<.>>>>>>.....
..<<<<<<<<<..>>>.>>>>>>.........................<<
<...>>>.........................<<<<<..<<<<<<<..<<
<<...<<<<<....>>>>>.>.>>>..>>>>.>>.>>>>>>....<<<<<
<<<<<<<..>>>.>.>>>>>>>>...........................
...<<<<.<<<.<<<.<<<<<<<<......>>>>.>>>>.>>>...>>>.
.>>>><<<<<.<<<..>>>.>>>>>
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6lqq Cryo-EM structure of 90 S small ribosomal subunit precursors in transition states.
Resolution4.1 Å
Binding residue
(original residue number in PDB)		L44 G45 T47 L68 L69 F70 F87 H88 R103 R341 R344 R346 H364 R381 K382 D383 Q385 R401 G403 G404 S405 T406 I407
Binding residue
(residue number reindexed from 1)		L26 G27 T29 L50 L51 F52 F69 H70 R85 R323 R326 R328 H346 R363 K364 D365 Q367 R383 G385 G386 S387 T388 I389
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003674 molecular_function
GO:0005515 protein binding
Biological Process
GO:0006364 rRNA processing
GO:0030490 maturation of SSU-rRNA
GO:0042254 ribosome biogenesis
Cellular Component
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005730 nucleolus
GO:0030686 90S preribosome
GO:0032040 small-subunit processome
GO:0034388 Pwp2p-containing subcomplex of 90S preribosome
GO:1990904 ribonucleoprotein complex

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Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6lqq, PDBe:6lqq, PDBj:6lqq
PDBsum6lqq
PubMed32943522
UniProtQ06078|UTP21_YEAST U3 small nucleolar RNA-associated protein 21 (Gene Name=UTP21)

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