Structure of PDB 4v7h Chain BB Binding Site BS02

Receptor Information
>4v7h Chain BB (length=243) Species: 5541 (Thermomyces lanuginosus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GRVIRNQRKGAGSIFTSHTRLRQGAAKLRTLDYAERHGYIRGIVKQIVHD
SGRGAPLAKVVFRDPYKYRLREEIFIANEGVHTGQFIYAGKKASLNVGNV
LPLGSVPEGTIVSNVEEKPGDRGALARASGNYVIIIGHNPDENKTRVRLP
SGAKKVISSDARGVIGVIAGGGRVDKPLLKAGRAFHKYRLKRNSWPKTRG
VAMNPVDHPHGGGNHQHIGKASTISRGAVSGQKAGLIAARRTG
Ligand information
>4v7h Chain B5 (length=3170) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
guuugaccucaaacagguaggaguacccgcugaacuuaagcauaucaaua
agcggaggaaaagaaaccaaccgggauugccuuaguaacggcgagugaag
cggcaaaagcucaaauuugaaaucugguaccuucggugcccgaguuguaa
uuuggagagggcaacuuuggggccguuccuugucuauguccuuggaacag
gacgucauagggggugagaaucccgugugcgaggagugcgguucuuugua
aagugccuucgaagagucgaguuguuugggaaugcagcucuaagugggug
gaaauucaucuaaagcuaaauauuggcgagagaccgauagcgaacaagua
cagugauggaaagaugaaaagaacuuugaaaagagagugaaaaaguacgu
gaaauuguugaaagggaagggcauuugaucacaugguguuuugugcccuc
ugcuccuuguggguaggggaaucucgcauuucacugggccagcaucaguu
uugguggcaggauaaacccauaggaauguagcuugccucgguaaguauua
uagccugugggaauacugccagcugggacugagugaaaugacguaaguca
aggaugcuggcauaaugguuauaugccgcccgucuugaaacacggaccaa
ggagucuaacgucuaugcgaguguuuggguaaaccauacgcguaaugaaa
gugagcguagguuggggccucgcaagaggugcacaaucgaccgauccuga
ugucuucggauggauuugaguaagagcauagcuguugggacccgaaagau
ggugaacuaugccugaauagggugaagccagaggaaacucugguggaggc
ucguagcgguuugacgugcaaaucgaucgucgaauuuggguauaggggcg
aaagacuaaucgaaccaucuaguagcugguuccugccgaaguuucccuca
ggauagcacgaagcucguuuuaugagguaagcaaugauuagaggucgggg
ucgaaagaccuugaccuauucucaaacuuuaaauauguaagaaguccuug
uuacuuaauugaacguggacauuugaaugagagcuuuuagugggccauuu
uugguaagcagaacuggcgaugcgggaugaaccgaacguagaguuaaggu
gccggaauacacgcucaucaacaaaagguguuaguucaucuagacagccg
gacgguggccauggaagucggaauccgcuaaggaguguguaacaacucac
cggccgaaugaacuagcccugaaaauggauggcgccaagcguguuaccua
uacucuaccgucagggugcccugacgaguaggcaggcguggaggucguga
cgaagccugaccguaaggucgggucgaacggccucuagugcagaucuugg
ugguaguagcaaauauucaaaugagaacuuugaagacugaagggggaaag
guuccacgucaacagcaguuggacguggguuagucgauccuaagagaugg
ggaagcuccguuucaaaggccugauuuuaugcaggccaccaucgaaggga
auccgguuaagauuccggaaccuggugguucuucacgguaacguaacuga
auguggagacgucgcgagcccugggaggaguuaucuuuucuucuuaacag
cuuaucacccgaauugguuuauccggaauggggucuuauggcuggaagag
gccagcaccuuugcuggcuccggugcgcuugacggccgugaaaauccaca
ggaaggaauaguuuucaugccaggucguacugauaaccgcagcaggucuc
caaggugaacagccucuaguugauagaauaaugugauaagggaagucggc
aaaauagauccguaacuucgggauaaggauuggcucuaaguuagaacugg
uacggacaaggggaaucugacugucuaauuaaaacauagcauugcgaugg
ucaaaagugauguugacgcaaugugauuucugcccagugcucgaauguca
aagugaagaaauucaaccaagcgcggguaaacggcgggaguaacuaugac
ucucuuaagguagccaaaugccucgucaucuaauuagugacgcgcaugaa
uggauuaacgagauucccacugucccuaucuacuaucuagcgaaaccaca
gccaagggaacgggcuuggcagaaucagcggggaaagaagacccuguuga
gcuugacucuaguuugacauugugaagagacauagaggguguagaauaag
ugggagcuucggcgccagugaaauaccacuaccuuuauguuucuuuacuu
auucaaugaagcggagcuggaauuaauuuuccacauccuuguguauaggg
ucccauucggggcugauccggguugaagacauugucagguggggaguuug
gcuggggcggccaucuguuaaacgauaacgcagauguccuaaggggggcu
cauggagaacagaaaucuccaguagaacaaaaggguaaaagcccccuuga
uuuugauuuucgugugaauacaaaccaugaaaguguggccuaucgauccu
uuagccucgaauuugaggcuagaggugccagaaaaguuaccacagggaua
acuggcuuguggcagucaagcguucauagcgacauugcuuuuugauucuu
cgaugucggcucuuccuaucauaccgaagcagaauucgguaagcguugga
uuguucacccacuaauagggaacgugagcuggguuuagaccgucgugaga
cagguuaguuuuacccuacugaugaauguuaccgcaauaguaauugaacu
uaguacgagaggaacaguucauucggauaauugguuuuugcggcugucug
aucaggcauugccgcgaagcuacauccgcuggauuauggcugaacgccuc
uaagucagaauccaugcuagaacgcggugauuucuuugcuccacacaaua
uguaccuuuuguauaauggcguccuuguggcgucuaccuuuuguauaaug
cuagcaacggugcacuuggcggaaaggccuugggugcuugcuggcgugaa
auugaacuauuuugcguggggaaaaucauuuguauacgacuuagauguac
aagggguauuguaagcaguagaguagccuuguuguuacgaucugcugaga
uuaccuuuugucugauuugu
.........................<<<<<<...................
>>>>>..>........<<....>>...<<<<......<<.....>>....
.>>>>...<<<....<......<<.<<<<<<...>>>>>>.>>......>
.......<<<<<<.<<<<<<<<<<<<<<<<<<<.....<<<<......>>
>>.((......<<<.....))>>>....>>>>>>>..>>>>>>>>....>
>>>>>>>>>.........<<<<..............>>>>.....<<<..
.(((....>>>..>>>..................................
<<....>>...............<<<<....>>>>...............
...................<<<<<..<.<......<<<...<.....<(<
<<<<<.....>>>>>>>.)........>...>>>......<<<<<<<<<<
<.<<<<<<<<........<<<<<<......<<<<<<<..>>>>>>>....
...>>>>>>......>>>>>.>>>.>>>>>>>.......<<<....>>>.
....>>>>.........>.>..>>>>>...<<<........>>>..<<<<
<......<<<<.<<<<<<....<(.<<<.....>>>..>)..........
.........<<<<<....<<<....>>>.....>>>>>.<<<<<<<<...
<<....>>...>>>.>>>.>>....>>>>>>.>>>>....<<.<...<<<
<<<.....<<<<<<<<<...<.....<<<<<<<....>>>>>>>......
>....<<<<.<<<<........>>>>>>>>....>>>>>>>>>....<..
.....>.......>>>>>>......>.>>..<<<<<<......<<<....
>>>..<<..<.<......<<<<<<...<<<<...<<...<.<<..<<<<<
<<....>>>>>>>..>>.>...>>..>>.>>....>>>>>>...<<<.<<
<..<......>.>>>.>>>...............>>...>>..<<<<.<<
<.........>>>.>>>>....<<<......>>>...<<<<<<...<<<<
((......<<<<<.<..........<<<..<<<<<<<<<.......<<<.
..<<....<<.........>>....>>.........<<......>>....
.>>>...>>>>>>>>>.>>>...........)).....>>>>>>.>>>>.
..>>>>>><<.<<<<....>>>>.>>....>>>>>>...<<<...<<<..
....<<<<<<<......>>>>>>>...>>>...>>>.........>>>>>
........<<.....<<<<<<.......>>>>>>.<<<<...<<<<..<<
...<<<<<<...<<.....>>.>>>>>>....<<((....<......<.<
<<....>>>>.......<<<<<<........>>>>>>.........>...
..<<<<........>>>>.>><<<<<<<......<<<....>>>......
..........<<<<...<...<.<<<<<<......[..>>>>>><..<<<
<............<.<.......>.>..............>>>>....>.
.<<<<<<....>>>>>>....>.....>....>>>>..............
..............>>>>.>.>>..))..>>.....<<......>>.>>>
>.<<<<.....>>>>.>>>>.....<<.....<.<<<<.<<.........
......<<<<<...............>>>>>.<.<<<.....>>>..>..
..........<<<<<<<<...<<<.........>>>..<<..<<<.....
<<<....>>>.......>>>..>>....<...<<..<<<<<<<....<..
....................>..>>>>>..>>>>.<<<<<.........>
>>>>........<.................................>...
..>......>.>>>>>>>.....>>.>>>>..>..>>..>>.........
.<<<<<........>>>>>....<<<<<..<<<.<<......<<<<.<<.
.<<..<<<<<.<<<<<<<<..<<<<<<<<<<<<<<...............
.<<......................>>.......>>>>>>>>>>>>>>..
.<<<<......<<<<...<<<<......>>>>..................
<<<......>>>....>>>>...>>>>.....>>>>>>>>..>>>>>...
<<<.....>>>...<<<<...........>>>>.........<.<<<<<.
..<<<<<<.......>>>>>>.....<<..[.((>>....>>>>.>>...
<<<...<<<......>>>...>>>..............))].........
<<<<..<....)))..>.>>>>............>>....>>>>>>....
....<.....<<<<<....<<.......>>....>>>>>......>....
.......<<<...<<<<..<.<<<<<<<......>>>>>>>...>.<<<.
........>>>.....>>>>.......>>>.......<<<<<<<....>>
>.>>>>....>>..>>>.>>>>>......<<<......<<<...<<<<<.
................>>>>>...<<<.....<.<..<<<<<<...<<<.
]..>>>.....>>>>>>.>.>...>>>...<<....<<<<<.........
..>>>>>....>>..>>>........>>>...........<.<<.<<<..
...................<<<.......>>>.................<
<<<<<<<..<<<...<.<<........>>..>..>>>>>>>>>>>.....
..........>>.>.>>>.....<<<..<..<.......>..>......<
<<<<<<.<<.....<<<<....<<<<<......>>>>>...>>>>....>
>..>>>>>>>....>>>...
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB4v7h Comprehensive molecular structure of the eukaryotic ribosome.
Resolution8.9 Å
Binding residue
(original residue number in PDB)
G2 R3 R6 Q8 R9 K10 G11 G13 S14 I15 F16 T17 S18 H19 R21 L22 R23 Q24 A26 K28 R30 T31 L32 Y34 A35 R37 K46 V49 H50 R54 G55 P57 K60 V62 P66 K68 Y69 R70 L71 R72 K92 K93 P103 E118 K119 P120 G121 R123 A125 L126 R128 A129 G131 N132 Y133 K145 L150 P151 S152 K155 K156 S160 D161 R163 R174 V175 K177 P178 L179 L180 K181 A182 G183 R184 K188 Y189 R190 K192 R193 S195 W196 P197 K198 T199 R200 G201 M204 V207 D208 G214 N215 H216 Q217 K221 R227 V230 Q233 K234 G236 L237 I238 A239 A240 R241 R242 T243 G244
Binding residue
(residue number reindexed from 1)
G1 R2 R5 Q7 R8 K9 G10 G12 S13 I14 F15 T16 S17 H18 R20 L21 R22 Q23 A25 K27 R29 T30 L31 Y33 A34 R36 K45 V48 H49 R53 G54 P56 K59 V61 P65 K67 Y68 R69 L70 R71 K91 K92 P102 E117 K118 P119 G120 R122 A124 L125 R127 A128 G130 N131 Y132 K144 L149 P150 S151 K154 K155 S159 D160 R162 R173 V174 K176 P177 L178 L179 K180 A181 G182 R183 K187 Y188 R189 K191 R192 S194 W195 P196 K197 T198 R199 G200 M203 V206 D207 G213 N214 H215 Q216 K220 R226 V229 Q232 K233 G235 L236 I237 A238 A239 R240 R241 T242 G243
Gene Ontology
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UnboundLocalError
Python 3.6.8: /usr/bin/python3
Mon Feb 17 08:35:07 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '4v7h', asym_id = 'BB', bs = 'BS02', title = 'Comprehensive molecular structure of the eukaryotic ribosome.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='4v7h', asym_id='BB', bs='BS02', title='Comprehensive molecular structure of the eukaryotic ribosome.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003735,0005840,0006412', uniprot = '', pdbid = '4v7h', asym_id = 'BB'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412', uniprot='', pdbid='4v7h', asym_id='BB')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>