Structure of PDB 4v5z Chain B3 Binding Site BS02

Receptor Information

>4v5z Chain B3 (length=48) Species: 9615 (Canis lupus familiaris)

SHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLG

Ligand information

>4v5z Chain B0 (length=2407)

agacguggcgacccgcugaauuuaagcauauuagucagcggaggaaaaga
aacuaaccaggauucccucaguaacggcgagugaacagggaagagcccag
cgccgaauccggacauggcguaggagucggguugcugggaagcagcccaa
agcggguggaaacuccaucuaaggcuaaauaccgcacgagaccgauaguc
aacaaguaccguaagggaaaguugaaaagaacuuugaagagagaguucaa
gagggcgugaaaccguuaagagguaaacggguggggucgcaguccgcccg
gaggauucaacccggcgucgcgagcguccaguaagacucacgggaaaccc
acccgacccgucuugaacacggaccaaggagucuaacacgugcgcgaguc
gggggcuacgaaagccgguggcgcaaugaaggugaagcacgagcgcacgu
guuaggacccgaaagauggugaacuaugccugggcagggcgaagccagag
gaaacucugguggagguccguagcggucugacgugcaaaucggucguccg
accuggguauaggggcgaaagacuaaucgaaccaucuaguagcugguucc
cuccgaaguuucccucaggauagcuggcgcucguuuuauccgguaaagcg
aaugauuagaggucuugauccaccuauucucaaacuuuaaaugguaagaa
ugcagugccuagugggccacuuuugguaagcagaacuggcgcugcgggau
gaccgaacgccggguuaaggcgcccgaugcgacgcucaucagaccccaga
aaagguguugguugauauagacagcaggacgguggccauggaagucggaa
uccgcuaaggaguguguaacaacucaccugccgaaucaacuagcccugaa
aaugguggcgcuggagcgucgggcccauacccggccgucccggccgcgac
gaguaggagggcgcugcggagccuugaagccagggcgcgggcccgggugg
gccgccgcaggugcagaucuuggugguaguagcaaauauucaaacgagaa
cuuugaaggccgaauggagaaggguuccaugugaacgcaguugaacaugg
gucagucgguccugagagauggccgucgaaagggagucggguucagaucc
ccgaauccgagucggagaagccgggagcuuugugaagggcggcccugaug
gguucgccccggagagggcccgugccuuggaaccgguagcucuggccuug
aaaaucguucgcgccgggccguacccauaucggcagcaggucuccaaggg
aacagccuggcauguuggaacaauguagguaagggaagucggcaagccgg
auccguaacuucgggauaaggauuggcucguagaacuggucggaccaggg
gaauccgacuguuuaauuaaaacaaagcaucgcgaaggccccggcgggug
uugacgcgaugugauuucugcccagugcucgaaugucaaagugaagaaau
ucaaugaagcgcggguaaacggcgggaguaacuaugacucucuuaaggua
gccaaaugccucgucaucuaauuagugacgcgcaugaauggaugaacgag
auucccacugucccuaccuacuauccagcgaaaccacagccaagggaacg
ggcuuggcggaaucagcggggaaagaagacccuguugagcuugacucuag
ucuggcacggugagagacaugagagguguagaauaagugggaggcccggc
cgccggugaaaaccacuacucugauguuuuucacugacggacagugccag
guggggaguuugacuggggcgguacaccugucaaacgguaacgcaggugu
ccuaaggcgagcucagggaggaccucccguggagcagaagggcaaaagcu
cgcuugaucuugauuuucguacgaauacagaccgugaaagcggggccuca
cgauccuucugcuuuuggguuuuaagcaggaggugucagaaaaguuacca
cagggauaacuggcuuguggcggccaagcguucauagcgacgucgcuuuu
ugauccuucgaugucggcucuuccuaucauugugaagcagaauucgccaa
gcguuggauuucacccacuaauagggaacgugagcuggguagaccgucgu
gagacagguuaguuuuacccuacugaugauguguugccaugguaauccug
cucaguacgagaggaaccgcagguucagacauuugguguaugugcuuggc
gagggccaauggggcgaagcuacaucugugggauuaugacugaacgccuc
uaagucagaaucccgcccaggcgacgauaaaccauucguagacgaccugc
uucuggugggguuucguacguagagagaucuauugaaaguccccuaccaa
ggguuug

.........(<<<<<<<<...[<<....>>.>.<[)>>>>>..>......
..<<....>>..<<<<<<<..[.<<.....>>>..>>>>>>>.......<
.<<....<<<>>>....>>.......<.<<<<<<<......>>>>>>>..
...<<<<<.((((((>>>>>...>>....................{.(>.
..)...<.<<....>>...>...<<......<<<<....>>>>..>>..{
...........................<<<<<<<<.<.....<..<..<.
...{{<((.(<.<<...).{>>.>.....>....>...>.....>.>>>>
>>>>>..<<<<...<...>>>>..<<<<....<<<<<<<<<<<<....<<
...<<<<.....>>>>...>>....]<....>...........>>>>>>>
>>>>>].<<.<..(<<<<<<....<<<<<<<<<<..<<<<(..<<<<<<<
....>>>>>>>...>.>>>...<<<<<[<............>>>>>>.).
.>>>>>>>>>>...<...<.].>).....]>>>>>>.......>>>><..
....(...[.<<<....>>>..(.<(<..<<..<<<.<(....<.<<...
<..<<<.<<..<........>..>>>>>.>.....>>...>>[).>>>..
...>>>>)..>.).......<.<<....>>..>...]..)].<<..<<..
...>>..<<<<...}...[{{..{.))..................>><..
...<<<<<<.<<.........<<<.......<.(................
>.........<<<<..)..>.>>>...>>>....>>.>>.>.>>>.>...
.....]}}..........}........}.}.>>.<<<<(.<.>..>>>..
>........).....<<<<....}.....(..(>>......)..).....
.>>>>.....}.......>>>><<<<<..[.......<(..<.......[
.>.>)....{....{<<<{............]..<.....><....>.<<
..}.<....<....<......<>..>......>.....<<....}..(>>
>....<.<<.<..<(....<...<<.....[<(..<<<....<.....(<
<)....>>....[..>........>>>>..)........>>>].......
....>...)>.>>..)>.>>....................>>>....]..
......[.........((....(.((.[...{<<......(....<....
.<<.........(>.....>......<<...>>.......>........<
<<<<<<<..).......>..{.....<<<<<<<<...<<<<....>>>>.
.>...>>>>>>>....<.<<<<..<<<<<<<..<<<....<<<<<....>
>>>.>...>>>>>>>>>..>>>>.<<<<.........>>>>.........
<...(.{.<...<<<<<....)..>>>>>>....>....>>.....>>.>
>>>>>...).>>...)]...)).).)<>>.....>>>.<<<<<<[.....
..>>>>>>...<<<<<..<<<........{<<<<<<[.[.[.<<<<<<.<
<<<<<<<<.<<<.<<<<<<<.<(.<(.......(..<<<...........
........)...)>>>..>>)..>>>>>>>.>>>...<>....>>>>>>>
>>..>>>>>.>.<<<[....>>>.(<<<<<<......)..>..>>>>>.<
.....<<<<<<<...<<<<<<.>>>>>>.....<<...(((>>....>>>
>>>>...<<<.<<<<.......[>>>.>>>><<<<....>>>>.>)))..
....<<<<<<<<<<..)))))).>>>>>>>>>>]..]...>>].]]....
>>>>.......<<.<...<<<<<<...<<.......>>...>>>>>>...
.>..>>]>....}<.<(.<.<<<<...<.<(<<<<.<..)..>>>>>...
>.>)<<<.......>>>......>>>>.(...>).>.><..<<<.<<<..
..>>>}.>>>..}.>....>>.>>>>>....<<<<<.<.<<<..<.<<<<
<.................>>>>>>.<<<<...}.<<<...<<<.<<<<<<
....>>>>>..]}>>>..>>>...>>>><<<<<...<<<<<.........
..>>>>>...>>>>>.>>>>.>>>>>..<<<<<.>..<<..]..>.>...
...<<<<<<<<<<......<<<<<..>.>>>>>...>>...>>>>>>>>.
.>>>>>.

Receptor-Ligand Complex Structure

Structure summary

• PDB: 4v5z Structure of the Mammalian 80S Ribosome at 8.7 A Resolution
• Resolution: 8.7 Å
• Binding residue (original residue number in PDB): F7 H43 W44 K48
• Binding residue (residue number reindexed from 1): F5 H41 W42 K46

Gene Ontology

--> -->

UnboundLocalError

Python 3.6.8: /usr/bin/python3 Tue Dec 3 01:35:58 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1435     title=pdb2title(pdbid)

   1436     if bs.startswith("BS"):

=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

   1438     else:

   1439         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '4v5z', asym_id = 'B3', bs = 'BS02', title = 'Structure of the Mammalian 80S Ribosome at 8.7 A Resolution'

 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='4v5z', asym_id='B3', bs='BS02', title='Structure of the Mammalian 80S Ribosome at 8.7 A Resolution')

   1295         display_ec(ec,csaOrig,csaRenu)

   1296     if go:

=> 1297         display_go(go,uniprot,pdbid,asym_id)

   1298     return pubmed,uniprot

   1299 

global display_go = <function display_go>, go = '0003735,0005840,0006412', uniprot = '', pdbid = '4v5z', asym_id = 'B3'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412', uniprot='', pdbid='4v5z', asym_id='B3')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>