Structure of PDB 7oyb Chain B1 Binding Site BS02

Receptor Information

>7oyb Chain B1 (length=394) Species: 7955 (Danio rerio)

SHRKFSAPRHGSLGFLPRKRCKRHRGKVKSFPKDDPSKPVHLTAFLGYKA
GMTHIVREVDRPGSKVNKKEVVEAVTVVETPPMIVVGVVGYVMTPRGLRS
FKTIFAEHISDECKRRFYKNWYKSKKKAFTKYCKRWQDEEGKKQLEKDFS
SMKKYCQIIRIIAHTQMRLLPHRQKKSHLMEIQLNGGTISDKVDWAREKL
EQSIPIANVFSQDEMIDVIGVTKGHGCKGVTSRWHTKKLPRKTHRGLRKV
ACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGVGYHNKDGKLVKN
NASTDYDLSNKSINPLGGFVHYGEVTNDFLMLKGCVVGTKKRVLTLRKSL
LVQTSRRAQEKIDLKFIDTTSKFGHGRFQTIEEKKNFMGPLKKD

Ligand information

• Ligand ID: MG
• InChI: InChI=1S/Mg/q+2
• InChIKey: JLVVSXFLKOJNIY-UHFFFAOYSA-N
• SMILES:
  ACDLabs 10.04
  OpenEye OEToolkits 1.5.0: [Mg+2]
  CACTVS 3.341: [Mg++]
• Formula: Mg
• Name: MAGNESIUM ION
• DrugBank: DB01378
• PDB chain: 7oyb Chain B1 Residue 501

Receptor-Ligand Complex Structure

Structure summary

• PDB: 7oyb A molecular network of conserved factors keeps ribosomes dormant in the egg.
• Resolution: 2.4 Å
• Binding residue (original residue number in PDB): M168 L171 H173
• Binding residue (residue number reindexed from 1): M167 L170 H172
• Annotation score: 4

Gene Ontology

Molecular Function

• GO:0003723 RNA binding
• GO:0003735 structural constituent of ribosome

Biological Process

• GO:0006412 translation
• GO:0031017 exocrine pancreas development

Cellular Component

• GO:0005737 cytoplasm
• GO:0005840 ribosome
• GO:0022625 cytosolic large ribosomal subunit
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:7oyb, PDBe:7oyb, PDBj:7oyb
• PDBsum: 7oyb
• PubMed: 36653451
• UniProt: A0A2R8Q924