Structure of PDB 4v4w Chain B1 Binding Site BS02

Receptor Information
>4v4w Chain B1 (length=52) Species: 562 (Escherichia coli) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AKGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKE
AK
Ligand information
>4v4w Chain B0 (length=2740) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
cguacacgguggaugcccuggcagucaaggcgaugaaggacgugcuaauc
ugcgauaagcgucgguaaggugauaugaaccguuuaaccggcgauuuccg
aauggggaaccccgaucauuauccaaaugaggcgaaccgggggaacugaa
acaucuaaguaccccgaggaaaagaaaucaaccgagauucccccaguagc
ggcgagcgaacggggagcagcccgagccuaaucaguguguguguugugga
agcgucuggaaaggcgcgcgauacagggugacagccccguacacaaugca
caugcuguagcucgaugaguagggcgggccgugguaccugucugaauaug
gggggaccauccuccaaggcuaaauacucugacugaccgauagugaacca
guaccgugagggaaaggcgaaaagaaccccggcgaggggagugaaaaaga
accugaaaccguguacguacaagcagugggaggcaccuuaugcguguuau
ggcgugccuuuuguauaaugggucagcgacuuauauucuguagcaagguu
aaccggggagccgaagggaaaccgagucuuaacgggcguuaaguugcagg
guauagacccgaaacccggugaucuagccaugggcagguugaagguuggg
uaacacuaacuggaggaccgaaccgacuaauguugaaaaauuagcggaug
acuuguggcugggggugaaaggccaaucaaaccgggagauagcugguucu
ccccgaaagcuauuuagguagcgccucgugaaucaucuccggggguagag
cacuguuucggcaagggggucgacuuccaacccgaugcaaacugcgaaua
ccggagauguuaucacgggagacacacggcggguguaacguccgucguga
agagggaaacaacccagaccgcagcuaaggucccaaagucaugguuaagu
gggaaacgaugugggaaggcccagacagccaggauguuggcuuagaagca
gccaucauuuaaagaaagcguaauagcucacuggucgagucggccugcgc
ggaagauguacggggcuaaaccaugcaccgaagcugcggcagcgacguua
ugcguuguuggguaggggagcguucuguagccugcgaaggugugcuguga
ggcaugcuggagguaucagaagugcgaaugcugacauaaguaacgauaaa
gcgggugaaaagcccgcucgccggaagaccaaggguuccuguccaacguu
aaucggggcagggugagucgacccuaaggcgaggccgaaaggcguagucg
augggaaacagguuaauauuccuguacuuggugugugggugauggaggga
cggagaaggcuauguuaugccaagcuauggcugcugguugguacgcucaa
gggcgaucgggucagaaaaucuaccggucacaugccucagacguaucggg
agcuuccucggaagcgaaguaacaaagcccucuuccaggaaaagcuucua
aacguugaaacaugucaaaucguaccccaaaccgacacagguggucaggu
agagaauaccaggcgcuugagagaacucgggugaaggaacuaggcaaaau
ggugccguaacuucgggagaaggcacgcugauuagcucgccugaucaguc
gaagauaccagcuggcugcaacuguuuauuaaaaacacagcacugugcaa
acacgaaaguggacguauacggugugacgccugcccggugccggaagguu
aaugggguugcaaagcucucgaagccccgguaaacggcggccguaacuau
aacgguccuaagguagcgaaauuccuugucggguaaguuccgaccugcac
gaauggcguaaugauggccaggcugucuccacccgagacucagugaaauu
gaacucgcugugaagaugcaguguacccgcggcaagacggaaagaccccg
ugaaccuuuacuauagcuugacacugaacauugagccuugauguguagga
uaggugggaggcuuugaaguguggacgccagucugcauggagccggccuu
gaaauaccacccuuuaauguuugauguucuaacccgaauccggggacagu
gucugguggguaguuugacuggggcggucuccuccuaaagaguaacggag
gagcacgaagguuggcuaauccuggcaucaggagguuagugcaauggcau
aagccagcuugacugcgagcgugacggcgcgagcaggugcgaaagcaggu
cauagugauccgguggucugaauggaagggccaucgucaacggaaaaggu
acuccggggauaacaggcugauaccgcccaagaguucauaucgacggcgg
uguuuggcaccucgaugucggcucaucacauccuggggcugaaguagguc
ccaaggguauggcuguucgccauuuaaagugguacgcgagcuggguuuag
aacgucgugagacaguucggucccuaucugccgugggcggagaacugagg
ggggcugcuccuaguacgagaggaccggaguggacgcaucacugguguuc
ggguugucagccauggcacugcccgguagcuaaaugcggagagauaagug
cugaaagcaucuaagcacgaaacuugccccgagaugaguucucccgaagg
aacguugaagacgacgacguugauaggccggguguguaagcgcagcaaug
cguugagcuaaccgguacuaaugaaccgaggucuugacca
<<<<<<<<<<.....<<..<<<<<<<<<<<<.........<<<.[...((
.>>>.....<<<<<<<..<<<))...].>>>.....>>>>>>>.......
....<<...>>....<<<<<.....>>>>>.>>...<<<<<<.....<..
....>......>>>>>.>.........<<....>>..<<<<<<.....<<
.....>>....>>>>>>..<<<.<<<<.....<<<<<<...<.<..<...
..<<<<......>>>>.(.......<<<......)>>>....>.>..>..
.>>>>>>..>>>>........<<<<<<<........>>>>>>>......<
<<<<..[[..>>>>>..>>>......>>.>>>>>>.>>............
...<<....>>....>>.........<<<<.....>>>>...........
.......>>>>>>>>>>.........<....<<<<<.......>>>>>..
.>....<.<........>.>.<<<<<<......<<<<<<<<.<<..<<<.
.........>>>...<<....>>..<<<<....>>>>.....>>.>>>>>
>>>....<<.<..<<<<<<<.....<<<<<<<<<..<<<....<<<<<<.
.....>>>>>>.....>>>...<<<.<<<<<........>>>>>>>>...
.>>>>>>>>>...<<<.....>>>......>>>>>>...>..>.>>..<<
<<<<....<<<<<....>>>>>..<<...<<..<<...<<<<.<....<<
...<...<<<<...<<<<<<..>>>>>>...>>>>...>..>>.....>.
>>>>...>>...>>...>>......<<<<<<<<.......>>>>>>>>..
...<<<......>>>...<<<<<<<...<<<((......<<<<<.<....
.......<..<<<<<..<<........<<<<<.<<...<<<<.......>
>>>...>>........<<<......>>>..>>>>>....>>..>>>>>.>
............)).....>>>>>>.>>>...>>>>>>>..<<<<<<<..
.>>>>>>>......>>>>>>...<<<<..<<<<.....<<<<<<<<....
>>>>>>>>..>>>>..>>>>.........>>>>>><.............<
<<<<<.......>>>>>><<<<....<<<<<.<<...<<<<<<...<<..
...>>.>>>>>>....((<<<<<....<<<.<.<<<....>>>.>.>>>.
...>>...<<<<........>>>>.))<<<<..<<<........<<<...
.<<<<<.<<<..<<<<..<<<<.<<...(((.>>>>>>..<<<<<.<<.<
<<..<<<<<.<............>>>>>>.....>>>..>>>>>>>....
.<<<........>>>.....>>>>..>>>.>>>>>.........>>>...
.........>>>..>>>>.>>>..>>.....<<......>>>>>>>..<<
<.....>>>..>>>>..<<<.........<<...<<..............
.<<<<<...............>>>>><<<<<<<<<.....>>>>>>>>>.
...........<<<<<<<<<..<<<.........>>>..<<<<<<<....
.<<<....>>>.......>>>>>>>..<<<<..<<....<..<<..<<<.
...<<<<<......>>>>>....>>>>>..>....>>.<<<<<<......
.>>>>>>....................<<<<<<.....>>>>>>......
....>>>>...>>.>>>>>>>.....>>....>>.....>>>.......>
.....<<<<<........>>>>>..<<<<<<<<.<<<.<<.......<<<
...<<.<...<..............<<<<<<<<<<<.<<.<.........
..................................................
..............>>>.>>>>>>>>>>>...<<<<....>>>>......
............>...<<<<.....>>>><<<<<<...........>>>>
>>..<<...<<<<<<<...<<<<<....>>>>>.....<<...(((>>..
..>>>>>>>...<<<<..<<........>>..>>>>.<<<....>>>.>>
))).........<<<<<<<....]]..>>>>>>>.............>>>
....>.>>.........<<.<.<<<<<<...<<.......>>...>>>>>
>...>>>..........<.........<<....<<<<<<<......>>>>
>>>.......<<.......>>.......>>..............>....<
<<<<<<....>>>.>>>>....>>..>>>>>>>>>>>...<<<<....<<
<<..<<<<<<.................>>>>>>.<<<<<...<<<<..<<
<<<<.<<<<))).>>>>...>>>>>>..>>>>.>>>>>..<<<.<..<<<
<<...........>>>>>...>>>>.>>>>........>>>>......<<
..<<<<.........>>>>....<<<<<<<<..<<....<<<........
>>>...>>...>>>>>.>>>.....>>.............
Receptor-Ligand Complex Structure
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PDB4v4w Elongation arrest by SecM via a cascade of ribosomal RNA rearrangements
Resolution15.0 Å
Binding residue
(original residue number in PDB)
K24 N25 K26 T28 L35 Q44
Binding residue
(residue number reindexed from 1)
K24 N25 K26 T28 L35 Q44
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0000049 tRNA binding
GO:0003735 structural constituent of ribosome
Biological Process
GO:0000027 ribosomal large subunit assembly
GO:0002181 cytoplasmic translation
GO:0006412 translation
GO:0046677 response to antibiotic
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:4v4w, PDBe:4v4w, PDBj:4v4w
PDBsum4v4w
PubMed16713583
UniProtP0A7N9|RL33_ECOLI Large ribosomal subunit protein bL33 (Gene Name=rpmG)

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