Structure of PDB 9ja1 Chain B Binding Site BS02

Receptor Information

>9ja1 Chain B (length=1100) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

DESAPITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTL
IISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKVFIGR
LPIMLRSKNCYLSEATESDLYKLKECPFDMGGYFIINGSEKVLIAQERSA
GNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGREGSSARTI
KATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVE
DGFVIQDRETALDFIGKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFL
GYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDI
FRYMQRTVELAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRY
TYSSTLSHLRRTNTPIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLM
SCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRN
PARLMETLRTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVED
DESLGHKELKVRKGHIAKLMATEYQDEYTWSSLLNEGLVEYIDAEEEESI
LIAMQPEDLEPDVDPAKRIRVSHHATTFTHCEIHPSMILGVAASIIPFPD
HNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYYPQKPLGTTRAME
YLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYM
DQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDV
IIGKTTPISSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTKI
PQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTV
AHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMY
NGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRS
RDGGLRFGEMERDCMIAHGAASFLKERLMEASDAFRVHICGICGLMTVIA
KLNHNQFECKGCDNKIDIYQIHIPYAAKLLFQELMAMNITPRLYTDRSRD

Ligand information

>9ja1 Chain T (length=23) [Search DNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

gctccttctcccatcctctcgat

Receptor-Ligand Complex Structure

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Structure summary

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PDB	9ja1 The RNA polymerase II elongation complex from Saccharomyces cerevisiae
Resolution	2.98 Å
Binding residue (original residue number in PDB)	A462 R857 R942 R1122 R1129 M1133
Binding residue (residue number reindexed from 1)	A376 R747 R819 R999 R1006 M1010

External links

PDB	RCSB:9ja1, PDBe:9ja1, PDBj:9ja1
PDBsum	9ja1
PubMed
UniProt	P08518\|RPB2_YEAST DNA-directed RNA polymerase II subunit RPB2 (Gene Name=RPB2)

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