Structure of PDB 9f6c Chain B Binding Site BS02

Receptor Information
>9f6c Chain B (length=706) Species: 9913 (Bos taurus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LKKDVFVPDDKEEFVKATILSREGGKVTAETEHGKTVTVKEDQVLQQNPP
KFDKIEDMAMLTFLHEPAVLYNLKERYASWMIYTYSGLFCVTINPYKWLP
VYNAEVVAAYRGKKRSEAPPHIFSISDNAYQYMLTDRENQSILITGESGA
GKTVNTKRVIQYFAVIAAIGGTLEDQIIQANPALEAFGNAKTVRNDNSSR
FGKFIRIHFGATGKLASADIETYLLEKSRVIFQLKAERDYHIFYQILSNK
KPELLDMLLITNNPYDYAFISQGETTVASIDDAEELMATDNAFDVLGFTT
EEKNSMYKLTGAIMHFGNMKFKLKEQAEPDGTEEADKSAYLMGLNSADLL
KGLCHPRVKVGNEYVTKGQNVQQVVYAKGALAKAVYERMFNWMVTRINAT
LETKQPRQYFIGVLDIAGFEIFDFNSFEQLCINFTNEKLQQFFNHHMFVL
EQEEYKKEGIEWEFIDFGMDLQACIDLIEKPMGIMSILEEECMFPKATDM
TFKAKLFDNHLGKSSNFQKPRNIKPEAHFSLIHYAGTVDYNIIGWLQKNK
DPLNETVVDLYKKSSLKMLSSLFANYQTVSALHRENLNKLMTNLRSTHPH
FVRCIIPNETKSPGVIDNPLVMHQLRCNGVLEGIRICRKGFPNRILYGDF
RQRYRILNPAADSRKGAEKLLGSLDIDHNQYKFGHTKVFFKAGLLGLLEE
MRDERL
Ligand information
Ligand ID6I6
InChIInChI=1S/C18H19N5O2/c1-3-16-21-17(22-25-16)12-4-6-14-11(8-12)5-7-15(14)20-18(24)13-9-19-23(2)10-13/h4,6,8-10,15H,3,5,7H2,1-2H3,(H,20,24)/t15-/m1/s1
InChIKeyIOVAZWDIRCRMTM-OAHLLOKOSA-N
SMILES
SoftwareSMILES
CACTVS 3.385CCc1onc(n1)c2ccc3[CH](CCc3c2)NC(=O)c4cnn(C)c4
OpenEye OEToolkits 2.0.7CCc1nc(no1)c2ccc3c(c2)CCC3NC(=O)c4cnn(c4)C
CACTVS 3.385CCc1onc(n1)c2ccc3[C@@H](CCc3c2)NC(=O)c4cnn(C)c4
OpenEye OEToolkits 2.0.7CCc1nc(no1)c2ccc3c(c2)CC[C@H]3NC(=O)c4cnn(c4)C
FormulaC18 H19 N5 O2
Nameaficamten;
~{N}-[(1~{R})-5-(5-ethyl-1,2,4-oxadiazol-3-yl)-2,3-dihydro-1~{H}-inden-1-yl]-1-methyl-pyrazole-4-carboxamide
ChEMBL
DrugBank
ZINC
PDB chain9f6c Chain B Residue 802 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB9f6c Aficamten is a small-molecule cardiac myosin inhibitor designed to treat hypertrophic cardiomyopathy.
Resolution2.33 Å
Binding residue
(original residue number in PDB)
R243 F244 G245 Y266 L267 I462 A463 F473 E474 C477 I478 T481 L658
Binding residue
(residue number reindexed from 1)
R200 F201 G202 Y223 L224 I416 A417 F427 E428 C431 I432 T435 L590
Annotation score1
External links
PDB RCSB:9f6c, PDBe:9f6c, PDBj:9f6c
PDBsum9f6c
PubMed39196032
UniProtQ9BE39|MYH7_BOVIN Myosin-7 (Gene Name=MYH7)

[Back to BioLiP]