Structure of PDB 9b0i Chain B Binding Site BS02

Receptor Information
>9b0i Chain B (length=814) Species: 759272 (Thermochaetoides thermophila DSM 1495) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KTVDSRIPTLIRNGLQTKKRSFFVVVGDHAKEAIVHLYYIMSSMDVRQNK
SVLWAYKKEPFELFISLNDIRYCYYKETDKILGNTYGMCILQDFEAITPN
ILARTIETVEGGGLVVLLLKGMTSLKQLYTMTMDVHARYRTEAHDDVIAR
FNERFLLSLGSCESCLVIDDELNVLPISGGKGVKPLPPPDEDEELSPAAK
ELKKIKDELEDTQPIGSLIKLARTVDQAKALLTFVDAIAEKTLRNTVTLT
AARGRGKSAAMGVAIAAAVAYGYSNIFITSPSPENLKTLFEFVFKGFDAL
DYKDHADYTIIQSTNPEFNKAIVRVNIHRNHRQTIQYIRPQDAHVLGQAE
LVVIDEAAAIPLPLVKKLMGPYLVFMASTISGYEGTGRSLSLKLIKQLRE
QSRSLKEITLSEPIRYAQGDNVEKWLNTLLCLDPDPSQCELLHVNRDTLF
SFHPVSEKFLQQMVALYVASHYKNSPNDLQLMSDAPAHELFVLTGPIQEG
RLPEPLCVIQVSLEGKISKQSILKSLSRGQQPAGDLIPWLVSQQFQDDEF
ASLSGARIVRIATNPDYMSMGYGSKALQLLVDYYEGKFALPPLFSKLSER
RPEKLDYVGVSYGLTQQLHKFWKRAQFVPVYLRQTANDLTGEHTCVMIRP
LQDGNDPSWLGAFAADFHKRFLSLLSYKFREFPSILALTIEESANAGAML
DPSNAPTELTKAELDQLFTPFDHKRLESYANGLLDYHVVLDLMPTIAQLY
FTGRLREAVKLSGLQQAILLALGLQRKDIDTLATELNLPGSQVLAIFMKI
MRKVTQHFGALVSG
Ligand information
Ligand IDA1AH4
InChIInChI=1S/C32H49N10O22P3S/c1-32(2,12-60-67(57,58)64-66(55,56)59-10-16-24(63-65(52,53)54)23(48)30(62-16)42-14-38-20-26(33)36-13-37-27(20)42)25(49)28(50)35-5-3-18(44)34-6-8-68-11-19(45)39-17-4-7-41(31(51)40-17)29-22(47)21(46)15(9-43)61-29/h4,7,13-16,21-25,29-30,43,46-49H,3,5-6,8-12H2,1-2H3,(H,34,44)(H,35,50)(H,55,56)(H,57,58)(H2,33,36,37)(H2,52,53,54)(H,39,40,45,51)/t15-,16-,21+,22+,23+,24-,25+,29-,30-/m1/s1
InChIKeyCDGBUBJHIITENP-CLLAXTHFSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7CC(C)(COP(=O)(O)OP(=O)(O)OC[C@@H]1[C@H]([C@@H]([C@@H](O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)[C@H](C(=O)NCCC(=O)NCCSCC(=O)NC4=NC(=O)N(C=C4)[C@H]5[C@H]([C@H]([C@H](O5)CO)O)O)O
ACDLabs 12.01OC1C(O)C(CO)OC1N1C=CC(=NC1=O)NC(=O)CSCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(O)OP(=O)(O)OCC1OC(n2cnc3c(N)ncnc32)C(O)C1OP(=O)(O)O
OpenEye OEToolkits 2.0.7CC(C)(COP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)C(C(=O)NCCC(=O)NCCSCC(=O)NC4=NC(=O)N(C=C4)C5C(C(C(O5)CO)O)O)O
CACTVS 3.385CC(C)(CO[P](O)(=O)O[P](O)(=O)OC[C@H]1O[C@H]([C@@H](O)[C@@H]1O[P](O)(O)=O)n2cnc3c(N)ncnc23)[C@@H](O)C(=O)NCCC(=O)NCCSCC(=O)NC4=NC(=O)N(C=C4)[C@@H]5O[C@H](CO)[C@H](O)[C@@H]5O
CACTVS 3.385CC(C)(CO[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O[P](O)(O)=O)n2cnc3c(N)ncnc23)[CH](O)C(=O)NCCC(=O)NCCSCC(=O)NC4=NC(=O)N(C=C4)[CH]5O[CH](CO)[CH](O)[CH]5O
FormulaC32 H49 N10 O22 P3 S
Name[[(2~{R},3~{S},4~{S},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(3~{R})-4-[[3-[2-[2-[[1-[(2~{R},3~{S},4~{R},5~{R})-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]-2-oxidanylidene-pyrimidin-4-yl]amino]-2-oxidanylidene-ethyl]sulfanylethylamino]-3-oxidanylidene-propyl]amino]-2,2-dimethyl-3-oxidanyl-4-oxidanylidene-butyl] hydrogen phosphate
ChEMBL
DrugBank
ZINC
PDB chain9b0i Chain B Residue 1103 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB9b0i Molecular Basis for RNA Cytidine Acetylation by NAT10.
Resolution3.02 Å
Binding residue
(original residue number in PDB)
V636 I638 T640 M645 S646 G648 G650 S651 S726 Y727 Q732 L733 R739
Binding residue
(residue number reindexed from 1)
V559 I561 T563 M568 S569 G571 G573 S574 S611 Y612 Q617 L618 R624
Annotation score3
External links