Structure of PDB 8x35 Chain B Binding Site BS02

Receptor Information
>8x35 Chain B (length=238) Species: 4081 (Solanum lycopersicum) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SCSLNLQKLCYELMPKHIALIMDGNRRWAKDKGLEVYEGHKHIIPKLKEI
CDISSKLGIQIITAFAFSTENWKRSKEEVDFLLQMFEEIYDEFSRSGVRV
SIIGCKSDLPMTLQKCIALTEETTKGNKGLHLVIALNYGGYYDILQATKS
IVNKAMNGLLDVEDINKNLFDQELESKCPNPDLLIRTGGEQRVSNFLLWQ
LAYTEFYFTNTLFPDFGEEDLKEAIMNFQQRHRRFGGH
Ligand information
Ligand IDDPO
InChIInChI=1S/H4O7P2/c1-8(2,3)7-9(4,5)6/h(H2,1,2,3)(H2,4,5,6)/p-4
InChIKeyXPPKVPWEQAFLFU-UHFFFAOYSA-J
SMILES
SoftwareSMILES
CACTVS 3.370[O-][P]([O-])(=O)O[P]([O-])([O-])=O
OpenEye OEToolkits 1.7.2[O-]P(=O)([O-])OP(=O)([O-])[O-]
ACDLabs 12.01[O-]P([O-])(=O)OP([O-])([O-])=O
FormulaO7 P2
NameDIPHOSPHATE
ChEMBL
DrugBank
ZINC
PDB chain8x35 Chain B Residue 402 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB8x35 Structural-Functional Correlations between Unique N-terminal Region and C-terminal Conserved Motif in Short-chain cis-Prenyltransferase from Tomato.
Resolution1.92 Å
Binding residue
(original residue number in PDB)		R249 E253 S257
Binding residue
(residue number reindexed from 1)		R186 E190 S194
Annotation score5
Enzymatic activity
Enzyme Commision number 2.5.1.28: dimethylallylcistransferase.
Gene Ontology
Molecular Function
GO:0000287 magnesium ion binding
GO:0004659 prenyltransferase activity
GO:0016740 transferase activity
GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups
GO:0045547 dehydrodolichyl diphosphate synthase activity
GO:0046872 metal ion binding
GO:0047863 dimethylallylcistransferase activity
Biological Process
GO:0009409 response to cold
GO:0009668 plastid membrane organization
GO:0016094 polyprenol biosynthetic process
Cellular Component
GO:0009507 chloroplast
GO:0009570 chloroplast stroma

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8x35, PDBe:8x35, PDBj:8x35
PDBsum8x35
PubMed38225831
UniProtC1K5M2|CPT1_SOLLC Dimethylallylcistransferase CPT1, chloroplastic (Gene Name=CPT1)

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