Structure of PDB 8wko Chain B Binding Site BS02

Receptor Information
>8wko Chain B (length=424) Species: 644042 (Lactiplantibacillus plantarum JDM1) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TNPENYHFETLQVHAGQTVDETGARAVPIYQTTSYVFKDAKQAAGRFALT
DAGNIYTRLTNPTTDVVDKRVAALEHGTAGVTLATGSAAITAAILNIAQQ
GDEIVAANTLYGGTYDLFSVTLKKLGITTHFVDPDEPANFETAINDHTKA
LYVESIGNPGINLVDFEAIGKIAHDHGIIFIVDNTFGTPYLVRPLEHGAD
VVVHSATFIGGHGTTMGGVIVEGGQFDWRASGKYPDFTTPDPQYNGLVFA
DLGGAAFTTKVRAETLRDTGATISPFNSFLLLQGLESLSLRVERHVTNTR
KIVAFLKAHPKVAWINYPELEDSPYHDLATKYFPNGVGSIFTLGLTGGEA
AGKALIEHLQLFSLLANVADAKSLIIHPASTTHAQLNEQELLAAGVTPDL
IRISVGVENADDLIADLDQALAQV
Ligand information
Ligand IDLLP
InChIInChI=1S/C14H22N3O7P/c1-9-13(18)11(10(6-17-9)8-24-25(21,22)23)7-16-5-3-2-4-12(15)14(19)20/h6-7,12,18H,2-5,8,15H2,1H3,(H,19,20)(H2,21,22,23)/b16-7+/t12-/m0/s1
InChIKeyYQSOQJORMNSDJL-QFULYMJESA-N
SMILES
SoftwareSMILES
CACTVS 3.385Cc1ncc(CO[P](O)(O)=O)c(C=NCCCC[CH](N)C(O)=O)c1O
ACDLabs 12.01n1c(C)c(O)c(\C=N\CCCCC(N)C(=O)O)c(c1)COP(=O)(O)O
OpenEye OEToolkits 1.7.6Cc1c(c(c(cn1)COP(=O)(O)O)/C=N/CCCCC(C(=O)O)N)O
CACTVS 3.385Cc1ncc(CO[P](O)(O)=O)c(C=NCCCC[C@H](N)C(O)=O)c1O
OpenEye OEToolkits 1.7.6Cc1c(c(c(cn1)COP(=O)(O)O)C=NCCCCC(C(=O)O)N)O
FormulaC14 H22 N3 O7 P
Name(2S)-2-amino-6-[[3-hydroxy-2-methyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]hexanoic acid;
N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE
ChEMBL
DrugBankDB04083
ZINCZINC000034150380
PDB chain8wko Chain B Residue 505 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8wko Allosteric regulation of an acidophilic O-acetylhomoserine sulfhydrylase from Lactobacillus plantarum
Resolution2.91 Å
Binding residue
(original residue number in PDB)		T88 G89 S90 Y114 T117 E157 T188 S208 A209 T210 F212 N371 V372 A373
Binding residue
(residue number reindexed from 1)		T85 G86 S87 Y111 T114 E154 T185 S205 A206 T207 F208 N367 V368 A369
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0003961 O-acetylhomoserine aminocarboxypropyltransferase activity
GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups
GO:0018826 methionine gamma-lyase activity
GO:0030170 pyridoxal phosphate binding
Biological Process
GO:0006520 amino acid metabolic process
GO:0019346 transsulfuration
GO:0071266 'de novo' L-methionine biosynthetic process

View graph for
Molecular Function
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Biological Process
External links
PDB RCSB:8wko, PDBe:8wko, PDBj:8wko
PDBsum8wko
PubMed38568076
UniProtA0A0G9F7S9

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