Structure of PDB 8vw5 Chain B Binding Site BS02

Receptor Information
>8vw5 Chain B (length=304) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
QAAADRRTVEKTWKLMDKVVRLCQNPKLQLKNSPPYILDILPDTYQHLRL
ILSKYDDNQKLAQLSENEYFKIYIDSLMKKSKRAIRLFKEGKERMYEENS
QDRRNLTKLSLIFSHMLAEIKAIFPNGQFQGDTFRITKADAAEFWRKFFG
DKTIVPWKVFRQCLHEVHQISSGLEAMALKSTIDLTCNDYISVFEFDIFT
RLFQPWGSILRNWNFLAVTHPGYMAFLTYDEVKARLQKYSTKPGSYIFRL
SCTRLGQWAIGYVTGDGNILQTIPHNKPLFQALIDGSREGFYLYPDGRSY
NPDL
Ligand information
Ligand IDA1AD4
InChIInChI=1S/C35H37N3O13/c1-17-34(44)36(4)33(21-12-18(38(45)46)13-26(49-7)32(21)50-16-29(42)43)37(17)27(39)14-19-24(47-5)10-8-22-30(19)51-31-20(15-28(40)41)25(48-6)11-9-23(31)35(22,2)3/h8-13,17,33H,14-16H2,1-7H3,(H,40,41)(H,42,43)/t17-,33+/m0/s1
InChIKeyPGHDTEOXCASCRK-UGAOPGRHSA-N
SMILES
SoftwareSMILES
CACTVS 3.385COc1ccc2c(Oc3c(CC(=O)N4[CH](C)C(=O)N(C)[CH]4c5cc(cc(OC)c5OCC(O)=O)[N+]([O-])=O)c(OC)ccc3C2(C)C)c1CC(O)=O
OpenEye OEToolkits 2.0.7C[C@H]1C(=O)N([C@H](N1C(=O)Cc2c(ccc3c2Oc4c(ccc(c4CC(=O)O)OC)C3(C)C)OC)c5cc(cc(c5OCC(=O)O)OC)[N+](=O)[O-])C
CACTVS 3.385COc1ccc2c(Oc3c(CC(=O)N4[C@@H](C)C(=O)N(C)[C@H]4c5cc(cc(OC)c5OCC(O)=O)[N+]([O-])=O)c(OC)ccc3C2(C)C)c1CC(O)=O
OpenEye OEToolkits 2.0.7CC1C(=O)N(C(N1C(=O)Cc2c(ccc3c2Oc4c(ccc(c4CC(=O)O)OC)C3(C)C)OC)c5cc(cc(c5OCC(=O)O)OC)[N+](=O)[O-])C
ACDLabs 12.01[O-][N+](=O)c1cc(c(OCC(=O)O)c(OC)c1)C1N(C)C(=O)C(C)N1C(=O)Cc1c(OC)ccc2c1Oc1c(ccc(OC)c1CC(=O)O)C2(C)C
FormulaC35 H37 N3 O13
Name[5-(2-{(2R,5S)-2-[2-(carboxymethoxy)-3-methoxy-5-nitrophenyl]-3,5-dimethyl-4-oxoimidazolidin-1-yl}-2-oxoethyl)-3,6-dimethoxy-9,9-dimethyl-9H-xanthen-4-yl]acetic acid
ChEMBL
DrugBank
ZINC
PDB chain8vw5 Chain B Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8vw5 Optimization of a Novel DEL Hit That Binds in the Cbl-b SH2 Domain and Blocks Substrate Binding.
Resolution1.76 Å
Binding residue
(original residue number in PDB)
Y266 R286 S288 R291 Q294 Q308 T309 I310
Binding residue
(residue number reindexed from 1)
Y229 R249 S251 R254 Q257 Q271 T272 I273
Annotation score1
External links
PDB RCSB:8vw5, PDBe:8vw5, PDBj:8vw5
PDBsum8vw5
PubMed38894924
UniProtQ13191|CBLB_HUMAN E3 ubiquitin-protein ligase CBL-B (Gene Name=CBLB)

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