Structure of PDB 8v06 Chain B Binding Site BS02
Receptor Information
>8v06 Chain B (length=416) Species:
10090
(Mus musculus) [
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QRPAPCYDPCEAVLVESIPEGLEFPNATTSNPSTSQAWLGLLAGAHSSLD
IASFYWTLTNNDTHTQEPSAQQGEEVLQQLQALAPRGVKVRIAVSKPNGP
LADLQSLLQSGAQVRMVDMQKLTHGVLHTKFWVVDQTHFYLGSANMDWRS
LTQVKELGVVMYNCSCLARDLTKIFEAYWFLGQAGSSIPSTWPRSFDTRY
NQETPMEICLNGTPALAYLASAPPPLCPSGRTPDLKALLNVVDSARSFIY
IAVMNYLPTMEFSPRRFWPAIDDGLRRAAYERGVKVRLLISCWGHSDPSM
RSFLLSLAALHDNHTHSDIQVKLFVVPTDESQARIPYARVNHNKYMVTER
ASYIGTSNWSGSYFTETAGTSLLVTQNGHGGLRSQLEAVFLRDWESPYSH
DLDTSANSVGNACRLL
Ligand information
Ligand ID
MAN
InChI
InChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3-,4+,5+,6+/m1/s1
InChIKey
WQZGKKKJIJFFOK-PQMKYFCFSA-N
SMILES
Software
SMILES
OpenEye OEToolkits 1.5.0
C(C1C(C(C(C(O1)O)O)O)O)O
CACTVS 3.341
OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
CACTVS 3.341
OC[C@H]1O[C@H](O)[C@@H](O)[C@@H](O)[C@@H]1O
OpenEye OEToolkits 1.5.0
C([C@@H]1[C@H]([C@@H]([C@@H]([C@H](O1)O)O)O)O)O
ACDLabs 10.04
OC1C(O)C(OC(O)C1O)CO
Formula
C6 H12 O6
Name
alpha-D-mannopyranose;
alpha-D-mannose;
D-mannose;
mannose
ChEMBL
CHEMBL365590
DrugBank
ZINC
ZINC000003860903
PDB chain
8v06 Chain H Residue 7 [
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Receptor-Ligand Complex Structure
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PDB
8v06
Crystal structures of exonucleases PLD3 and PLD4
Resolution
2.73 Å
Binding residue
(original residue number in PDB)
V159 K160
Binding residue
(residue number reindexed from 1)
V88 K89
Annotation score
4
Enzymatic activity
Enzyme Commision number
3.1.16.1
: spleen exonuclease.
Gene Ontology
Molecular Function
GO:0003824
catalytic activity
View graph for
Molecular Function
External links
PDB
RCSB:8v06
,
PDBe:8v06
,
PDBj:8v06
PDBsum
8v06
PubMed
38537643
UniProt
O35405
|PLD3_MOUSE 5'-3' exonuclease PLD3 (Gene Name=Pld3)
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