Structure of PDB 8uci Chain B Binding Site BS02

Receptor Information
>8uci Chain B (length=380) Species: 1343739 (Palaeococcus pacificus DY20341) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MVSSYFKGILLNLGLDEERIEVLENKGGIVEDEFEGMRYLRLKDSARSLR
RGTVVFDEHNIILGFPHIKRVVQLENGIRRAFKRKPFYVEEKVDGYNVRV
AKIGEKILVFTRGGFVCPFTTERIEDFITLDFFKDYPNMVLCGEMAGPES
PYLVEGPPYVKEDIQFFLFDIQEKKTGRSLPVEERLKLAEEYGIPSVEVF
GLYDLSRIDELHALIDRLTKEKREGIVMKSPDMKKIVGYVTPYANINDIK
IGARIFFDLPHGYFMQRIKRLAFYLAERKIRGEEFDEYARALGKVLLEPF
VESIWDISSGDDEIAELFTVRVKKLETAHKMVTHFERLRLKIHIDDIEVL
DNGYWRITFKRVYPDATKEMRELWNGHAFV
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain8uci Chain B Residue 410 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB8uci Characterisation and Engineering of a Thermophilic RNA Ligase from Palaeococcus pacificus
Resolution2.14 Å
Binding residue
(original residue number in PDB)		D94 E155 D248
Binding residue
(residue number reindexed from 1)		D94 E155 D248
Annotation score4
Enzymatic activity
Enzyme Commision number 6.5.1.3: RNA ligase (ATP).
Gene Ontology
Molecular Function
GO:0005524 ATP binding
GO:0016874 ligase activity
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:8uci, PDBe:8uci, PDBj:8uci
PDBsum8uci
PubMed38421610
UniProtA0A075LQ94

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