Structure of PDB 8tvs Chain B Binding Site BS02

Receptor Information
>8tvs Chain B (length=1041) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DESAPITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTL
ILEKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVK
KRTYEASGKVFIGRLPIMLRSKNCYLSEATESDLYKLKECPFDMGGYFII
NGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSASTLQVKLYGREG
SSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEM
LKPCVEDGFVIQDRETALDFIGRRGTKRIQYAKDILQKEFLPHITQLEGF
ESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTL
FKKLTKDIFRYMQRTFNMKLAINAKTITSGLKYALATGNWGRAGVSQVLN
RYTYSSTLSHLRRTNTPILHNTHWGLVCPAETPEGQACGLVKNLSLMSCI
SVGTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPAR
LMETLRTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDES
LGHKELKVRKGHIAKLMATEYQDIEGGEEYTWSSLLNEGLVEYIDAEEEE
SILIAMQPEDLEPAEANTTFTHCEIHPSMILGVAASIIPFPDHNQSPRNT
YQSAMGKQAMGVFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELP
AGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGM
SITETFEKPQRENGIVDQVLVTTNQDGLKFVKVRVRTTKIPQIGDKFASR
HGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSK
VAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMA
QIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEM
ERDCMIAHGAASFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQFECK
GCDNKIDIYQIHIPYAAKLLFQELMAMNITPRLYTDRSRDF
Ligand information
>8tvs Chain T (length=46) [Search DNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
cgctctgctccttctcccatcctctcgatggctatgagatcaacta
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8tvs Elf1 promotes Rad26's interaction with lesion-arrested Pol II for transcription-coupled repair.
Resolution4.4 Å
Binding residue
(original residue number in PDB)		K210 Y459 T463 M792 R1122 R1129 G1131 M1133
Binding residue
(residue number reindexed from 1)		K155 Y383 T387 M674 R939 R946 G948 M950
Enzymatic activity
Enzyme Commision number 2.7.7.6: DNA-directed RNA polymerase.
Gene Ontology
Molecular Function
GO:0001055 RNA polymerase II activity
GO:0003677 DNA binding
GO:0003729 mRNA binding
GO:0003899 DNA-directed 5'-3' RNA polymerase activity
GO:0003968 RNA-dependent RNA polymerase activity
GO:0005515 protein binding
GO:0008270 zinc ion binding
GO:0016779 nucleotidyltransferase activity
GO:0032549 ribonucleoside binding
GO:0034062 5'-3' RNA polymerase activity
GO:0046872 metal ion binding
Biological Process
GO:0001172 RNA-templated transcription
GO:0006351 DNA-templated transcription
GO:0006366 transcription by RNA polymerase II
GO:0006367 transcription initiation at RNA polymerase II promoter
GO:0006368 transcription elongation by RNA polymerase II
Cellular Component
GO:0000428 DNA-directed RNA polymerase complex
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005665 RNA polymerase II, core complex
GO:0005739 mitochondrion
GO:0010494 cytoplasmic stress granule

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8tvs, PDBe:8tvs, PDBj:8tvs
PDBsum8tvs
PubMed38194460
UniProtP08518|RPB2_YEAST DNA-directed RNA polymerase II subunit RPB2 (Gene Name=RPB2)

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