Structure of PDB 8t05 Chain B Binding Site BS02

Receptor Information
>8t05 Chain B (length=201) Species: 1774208 (Ciona robusta) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GLILVKFLLPAISSGAFFIPGIFATKKRLFTLAFLYIFTAFFQLFFHLCT
TPLLSLLFCLMGKKLLTFFSTYGLVLSIYSTLTQLTRYTDDRKHSAVVCG
GLLIGVRIFQENEGPGVYAGPLITGGLLLAISWGQEMYRSKALYPDKEKW
LKIILPSFALGAVSLLLLCVFQNSWNYAFVHSIHHLLMSAAITIILRLVE
D
Ligand information
Ligand IDCLR
InChIInChI=1S/C27H46O/c1-18(2)7-6-8-19(3)23-11-12-24-22-10-9-20-17-21(28)13-15-26(20,4)25(22)14-16-27(23,24)5/h9,18-19,21-25,28H,6-8,10-17H2,1-5H3/t19-,21+,22+,23-,24+,25+,26+,27-/m1/s1
InChIKeyHVYWMOMLDIMFJA-DPAQBDIFSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0CC(C)CCCC(C)C1CCC2C1(CCC3C2CC=C4C3(CCC(C4)O)C)C
CACTVS 3.341CC(C)CCC[C@@H](C)[C@H]1CC[C@H]2[C@@H]3CC=C4C[C@@H](O)CC[C@]4(C)[C@H]3CC[C@]12C
ACDLabs 10.04OC4CCC3(C(=CCC2C1C(C(C(C)CCCC(C)C)CC1)(C)CCC23)C4)C
OpenEye OEToolkits 1.5.0CC(C)CCC[C@@H](C)[C@H]1CC[C@@H]2[C@@]1(CC[C@H]3[C@H]2CC=C4[C@@]3(CC[C@@H](C4)O)C)C
CACTVS 3.341CC(C)CCC[CH](C)[CH]1CC[CH]2[CH]3CC=C4C[CH](O)CC[C]4(C)[CH]3CC[C]12C
FormulaC27 H46 O
NameCHOLESTEROL
ChEMBLCHEMBL112570
DrugBankDB04540
ZINCZINC000003875383
PDB chain8t05 Chain B Residue 302 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8t05 Cryo-EM structures of Myomaker reveal a molecular basis for myoblast fusion.
Resolution3.22 Å
Binding residue
(original residue number in PDB)		I105 T125
Binding residue
(residue number reindexed from 1)		I104 T124
Annotation score4
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sat Nov 30 15:14:05 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '8t05', asym_id = 'B', bs = 'BS02', title = 'Cryo-EM structures of Myomaker reveal a molecular basis for myoblast fusion.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='8t05', asym_id='B', bs='BS02', title='Cryo-EM structures of Myomaker reveal a molecular basis for myoblast fusion.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0016020', uniprot = '', pdbid = '8t05', asym_id = 'B'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0016020', uniprot='', pdbid='8t05', asym_id='B')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>