Structure of PDB 8qcc Chain B Binding Site BS02

Receptor Information
>8qcc Chain B (length=280) Species: 562 (Escherichia coli) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RTQWPSPAKLNLFLYITGQRADGYHTLQTLFQFLDYGDTISIELRDDGDI
RLLTPVEGVEHEDNLIVRAARLLMKTAADSGRLPTGSGANISIDKRLPVG
GGLGGGSSNAATVLVALNHLWQCGLSMDELAEMGLTLGADVPVFVRGHAA
FAEGVGEILTPVDPPEKWYLVAHPGVSIPTPVIFKDPELPRNTPKRSIET
LLKCEFSNDCEVIARKRFREVDAVLSWLLEYAPSRLTGTGACVFAEFDTE
SEARQVLEQAPEWLNGFVAKGVNLSPLHRA
Ligand information
Ligand IDUKO
InChIInChI=1S/C14H18N4O3S2/c15-13-10(3-1-7-16-23(20,21)11-5-6-11)9-18(14(19)17-13)12-4-2-8-22-12/h9,11-12,16H,2,4-8H2,(H2,15,17,19)/t12-/m1/s1
InChIKeyDXQFIQXYAWBCLC-GFCCVEGCSA-N
SMILES
SoftwareSMILES
CACTVS 3.385NC1=NC(=O)N(C=C1C#CCN[S](=O)(=O)C2CC2)[CH]3CCCS3
CACTVS 3.385NC1=NC(=O)N(C=C1C#CCN[S](=O)(=O)C2CC2)[C@H]3CCCS3
OpenEye OEToolkits 2.0.7C1C[C@@H](SC1)N2C=C(C(=NC2=O)N)C#CCNS(=O)(=O)C3CC3
OpenEye OEToolkits 2.0.7C1CC(SC1)N2C=C(C(=NC2=O)N)C#CCNS(=O)(=O)C3CC3
FormulaC14 H18 N4 O3 S2
Name~{N}-[3-[4-azanyl-2-oxidanylidene-1-[(2~{R})-thiolan-2-yl]pyrimidin-5-yl]prop-2-ynyl]cyclopropanesulfonamide
ChEMBL
DrugBank
ZINC
PDB chain8qcc Chain B Residue 302 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8qcc E.coli IspE in complex with a ligand (1)
Resolution1.9 Å
Binding residue
(original residue number in PDB)
K10 N12 Y25 H26 L28 F32 A140 D141 V156 T181 F185
Binding residue
(residue number reindexed from 1)
K9 N11 Y24 H25 L27 F31 A139 D140 V155 T180 F184
Annotation score1
External links
PDB RCSB:8qcc, PDBe:8qcc, PDBj:8qcc
PDBsum8qcc
PubMed
UniProtB7LXC3|ISPE_ECO8A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (Gene Name=ispE)

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