Structure of PDB 8p4x Chain B Binding Site BS02

Receptor Information

>8p4x Chain B (length=526) Species: 6359 (Platynereis dumerilii) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

EHVSLHWFRHGLRLHDNPALLKSLEGAKEFYALFIWDGEVAGTKLVSYPR
MKFLLECLKDLDDSLKKHGGRLYVVKGPSDVVIKQLIEEWGVTRVTCEID
PEPIWQPRDKAVKDLCATKGVKWFDYNSHLLWDPKAVCDANGGRPPHTYK
LFCQVTDLLGKPETPHPDPDFSHVQMPVSDDFDDKFGLPTLKELGCEPEC
EEQEKPFNKWQGGETGALELLETRLMIERTAYKAGYIMPNQYIPDLVGPP
RSMSPHLRFGALSIRKFYWDLHNNYAEVCGGEWLGALTAQLVWREYFYCM
SYGNPSFDKMEGNPICLQIPWYKDEEALEKWKQGQTGFPWIDACMRQLRY
EGWMHHVGRHAVACFLTRGDLWISWVDGLEAFYKYMLDGDWSVCAGNWMW
VSSSAFENCLQCPQCFSPVLYGMRMDPTGEFTRRYVPQLKNMPLKYLFQP
WKAPKEVQEKAGCVIGEDYPSPMVDHKEASSKCRRMMEDVKSIIKDPEVW
HCTPSDTNEVRKFCWLPEHMTADQPC

Ligand information

Ligand ID

InChI

InChI=1S/Mg/q+2

InChIKey

JLVVSXFLKOJNIY-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Mg+2]
CACTVS 3.341	[Mg++]

Formula

Name

MAGNESIUM ION

PDB chain

8p4x Chain B Residue 602 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	8p4x A marine cryptochrome with an inverse photo-oligomerization mechanism
Resolution	2.57 Å
Binding residue (original residue number in PDB)	S282 M283
Binding residue (residue number reindexed from 1)	S252 M253
Annotation score	4

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0003677	DNA binding
GO:0071949	FAD binding

	Biological Process
GO:0032922	circadian regulation of gene expression
GO:0043153	entrainment of circadian clock by photoperiod

	Cellular Component
GO:0005634	nucleus
GO:0005737	cytoplasm
GO:0048471	perinuclear region of cytoplasm

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Molecular Function

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Cellular Component

External links

PDB	RCSB:8p4x, PDBe:8p4x, PDBj:8p4x
PDBsum	8p4x
PubMed	37903809
UniProt	G8Z9G7

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